Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0900 ATGGAACCCAGCTTCATTGAGCATAAAGTTTTCACTCACAAGCTTGCCCCTTTCAACACCCCACCAACACCAAAGGTAGTTCGGATTTCAGTGATGGATCCTTACGCCACAGACGATGAAGATGAACATCATGGGTTGGTTCACAAACCCAGAATGAAGAAGATTGTGAATGAGATCAGAATAGGTAATAGTAATGTATCAGTGGAAGAGCATTTTAAGAGAAGAACCGAAGAAAAGAGTATTGGAAAGAAGAAGCTTAGAGGTGTTCGTCGAAGGCCATGGGGAAGATGGGCTGCAGAAATCAGAGATCCTGTGAAGAGGACAAGGGTGTGGCTTGGAACCTATGACACTGCTGAAGAGGCTGCAATGGTTTATGATAAAGCAGCTATTAACTTTAGAGGCTCCAATGCTCTTACCAATTTCATCAAGCCTCCGGGGAATGAATATGTTCTCCCAACACAAGGTTTTGATATGGACATTGACACAAATGTTGCTTTTGATGATTATGTCTCTAGAGAATTTAAAGGTACTAAGGTGAAGAGTGAGGTTGAAAGTGTGAGTTGTGAGAATGATTCAGGTAAAGATCAGTCTCATTTGCCTTCACCCAAGTCTGTGTTTGGGTTCAAGTTTGTTGAACCTGTGTTGGAGGTTTTTGAAACAAAGGGTGTGATCAAAGAAGACCCAAGTTCGCAAGATGGTTTTTTGTTTTTAGATTCAGTGTCCACTGATTGTTATTTGAATTTTGAAACTCATGATCCTCCGGTATCTCTTAATGAAACTAGTGTAACTCATTTTTTTTTAAATGACAATTTCAGTGATGTTTCTTGTCATCTCAATGGGGATTTTGAATCGTGCAATTGGGACATAGATAATTACTTCTAA 882 0.398 MEPSFIEHKVFTHKLAPFNTPPTPKVVRISVMDPYATDDEDEHHGLVHKPRMKKIVNEIRIGNSNVSVEEHFKRRTEEKSIGKKKLRGVRRRPWGRWAAEIRDPVKRTRVWLGTYDTAEEAAMVYDKAAINFRGSNALTNFIKPPGNEYVLPTQGFDMDIDTNVAFDDYVSREFKGTKVKSEVESVSCENDSGKDQSHLPSPKSVFGFKFVEPVLEVFETKGVIKEDPSSQDGFLFLDSVSTDCYLNFETHDPPVSLNETSVTHFFLNDNFSDVSCHLNGDFESCNWDIDNYF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0900 293 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Apr4g0900 293 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Apr4g0900 293 CDD AP2 84 141 IPR001471 GO:0003700|GO:0006355
Apr4g0900 293 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Apr4g0900 293 Gene3D AP2/ERF domain 84 143 IPR036955 GO:0003700|GO:0006355
Apr4g0900 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 5 293 - -
Apr4g0900 293 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Apr4g0900 293 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Apr4g0900 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 293 - -
Apr4g0900 293 SUPERFAMILY DNA-binding domain 85 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0900 Apr-Chr4 7236924 7237805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0900 5 289 AP2-EREBP Transcription Factor Family AT3G61630 34.251 5.17e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g0900 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0900 - - ccaj:109796536 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0900 4 7236924 7237805 Apr4g0900 4 7236924 7237805 ECH