Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0880 ATGAATTGCTTTCCGTGTTTTACAAAGAGCAAGAGAAGCAATAGCAAGAAGGAGCAAGGCTCAGGGCCTACACCCCAGGAAAATGTTAAACAAAAGGCAGATGACCCAAACCAAGTTGACACTTCAAATATTCAAGCACAAAATTTCACTTTCCGTGAGCTGGCAATTGCAACGAAGAATTTCCGCCAAGAGTGCTTGATGGGAGAAGGTGGCTTTGGAAGAGTTTACAAGGGAACAATTCCTGCAACCGGGCAGGTGGTAGCAGTGAAGCAACTTGATCGAAATGGGATGCAGGGCAGTAGGGAATTTCTGGTTGAGGTTTTGATGTTGAGTCTCTTGAGCCATGAAAATCTGGTCAAACTCACTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTGTATGAGTTTATGCCAGGAGGCAATTTAGAAAGCTGTCTTCTTGAGAGGAAACCAGATGAACCTCCATTAGATTGGTACAGCAGAATGAAAATAGCATCACATGCGGCGAAAGGACTATGGTACTTGCATGACAAGGCCAATCCTTCAGTCATATACAGGGACTTGAAATCAGCGAACATCTTGCTGGACAACGATAACAATGCAAAACTATCTGATTATGGACTGGCCAAACTTGCTGGTAAAGATAAGATGAACACCGCACCCACAAGAGTTATGGGTACCTATGGTTACAGTGCTCCGGAATATGTAAGAACGGGTAATCTCACCTTGAAATCAGATGTGTACAGTTTTGGAGTTGTCTTGCTTGAGCTCATAACTGGACGGCGAGCCATTGACACCACAAGATCGCACGACGAGCAAAATCTAGTTTCATGGGCACAACCCATATTCAGGGACCCTAAAAGATATCCAGATATGGCAGATCCAAATCTGAATAAAAAATTCCCAGAGAAGGATCTGAATCAAGTTGTTGCAATTGCAGCAATGTGCTTACAGGAGGAAGCAGCAGCCCGTCCTTTGATGAGTGATGTTGTAACCGCTCTAAGTTTTCTTTCCACGTCTCCTCCAGATCCTTCCACCTTGCCCCCAGAGAAGAGTGCTTCTGTAAAAGACAGTGAAAGCGAAGAAGAATCTGACAAGGACAGCCAGAGTTCCGATGGAGAGGATAACGGAACTGCTGGTACAGCCAGTGGAAAATACCAAGATAGTGATGAGGCCTCAGAATCTGAAGATGATGATTATTATGAGAGTGAAAACCAGCATAATTATAGTCCACAAGATATTAAAGAGACTCAAGCGTTTTACTCCAAGTCAAGCCGCAAGAGCAGCACCAGATCAAAGAACGGAACCAGATCAAGGTCTAGTTCAGATTCAGAAAATGGAACTGTCTCAACGACTCACAAAAACAGCAGAAAGAAGAGCAGCAAGAAATCTTCTTTGAATCAGAAGAGCAGCAAGAAATCTTCTACGAACCAAAAGAGCAGTAAGAAATCTTCAGTGAGAATTTCAAGCCACAAGAAAAAGAAGGGATCGGAGGATGGAAGCCATTCATCCAATTTAAGCAGTAAAAGTGGAGATGGTGTTGTTGATCGTAGTGGGAGCAAGCCATCGCATGGAGATGCATCTTTTGGCCTAATCAGCAGTGACAATGAGAGCAGCACAAGGTCAGGTCAAAGAACCAGCATGCGTTTAGGCCATACCAGCAGCAGGGGATCAGAGGAGGGAAGTGTTCATTCATGA 1701 0.4415 MNCFPCFTKSKRSNSKKEQGSGPTPQENVKQKADDPNQVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGMQGSREFLVEVLMLSLLSHENLVKLTGYCADGDQRLLVYEFMPGGNLESCLLERKPDEPPLDWYSRMKIASHAAKGLWYLHDKANPSVIYRDLKSANILLDNDNNAKLSDYGLAKLAGKDKMNTAPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAIDTTRSHDEQNLVSWAQPIFRDPKRYPDMADPNLNKKFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTSPPDPSTLPPEKSASVKDSESEEESDKDSQSSDGEDNGTAGTASGKYQDSDEASESEDDDYYESENQHNYSPQDIKETQAFYSKSSRKSSTRSKNGTRSRSSSDSENGTVSTTHKNSRKKSSKKSSLNQKSSKKSSTNQKSSKKSSVRISSHKKKKGSEDGSHSSNLSSKSGDGVVDRSGSKPSHGDASFGLISSDNESSTRSGQRTSMRLGHTSSRGSEEGSVHS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0880 566 SUPERFAMILY Protein kinase-like (PK-like) 47 360 IPR011009 -
Apr4g0880 566 Pfam Protein kinase domain 63 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0880 566 MobiDBLite consensus disorder prediction 468 485 - -
Apr4g0880 566 MobiDBLite consensus disorder prediction 17 41 - -
Apr4g0880 566 MobiDBLite consensus disorder prediction 374 389 - -
Apr4g0880 566 ProSiteProfiles Protein kinase domain profile. 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0880 566 PANTHER RECEPTOR KINASE-LIKE PROTEIN 1 545 - -
Apr4g0880 566 PANTHER OS07G0668900 PROTEIN 1 545 - -
Apr4g0880 566 MobiDBLite consensus disorder prediction 528 566 - -
Apr4g0880 566 MobiDBLite consensus disorder prediction 1 41 - -
Apr4g0880 566 Gene3D Phosphorylase Kinase; domain 1 23 137 - -
Apr4g0880 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Apr4g0880 566 CDD STKc_IRAK 67 335 - -
Apr4g0880 566 Gene3D Transferase(Phosphotransferase) domain 1 138 344 - -
Apr4g0880 566 MobiDBLite consensus disorder prediction 406 455 - -
Apr4g0880 566 MobiDBLite consensus disorder prediction 339 566 - -
Apr4g0880 566 SMART serkin_6 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0880 Apr-Chr4 7124163 7127217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0880 1 367 Glycoside Hydrolase AT3G07070 61.069 2.19e-168 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Apr4g0880 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0880 - - gmx:100807682 734.561