Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0876 ATGGCGAAGAGTGAGAGCGGGAGAGAGGTGTCGGTGTCGGCGTCGGAGTTGAAGGAGAAGTTGTGGGAATTGGTGAAAGCCATCGTCCACACCGATGACTACACCGTTCAAGCCACCGACGAGGCCATCTCCACCCTAAAGTCTCTGAAGGATTTCAAATCTGCAAGTGGAACCTCTTTCTCCGACAGATTGGACCATTTTGCCCTTCCTCCCCATTTTCGCTGCCCCATTTCCACCCATTTGATGACCGATCCTGTTATCTTGTCCTCCGGTCAGACTTATGATCGGCCATTCATCCAGAGGTGGTTGAATGAAGGTAATAGAACATGCCCACAAACCCAGCAGGTTCTCTCTCACACAATCCTCACTCCGAATTATTTGGTCCGGGACATGATTCAGCAGTGGTGTAATGACCGTGGAATTGAGCTGCCAAAGCCTGCTTGCGACATCCATGAAGTTGTGACTGATGCCGACAGAGACCATTTAAACTTCTTGCTTCGTAAGTTGTCCTTGTCTGTTTCTGATCAGAAAGAAGCTGCCAAAGAGCTTCGCCGGTTGACGAAGCGAATGCCTTCGATTCGAACCCATTTTGGGGAGTCTAGTGATGTGATTTTGCAGTTGCTGAGTCCTTTATCGCCTGGCACGCCTTGTGCTGACTCTGATCTCCAAGAGGACTTGATCACCACGGTTCTGAATCTCTCAATTCATGACGATAATAAGAAAGTGTTTGCAGAGGATCCGACTGTCATTTCTCTGCTTATTGATGCCTTGAAATCTGGAACTGTTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCACCTTATCGGCTCTCGACTCCAACAAGCACATCATTGGAAAATCTGGAGCTATCAAACATCTGCTTGACCTTTTACATGAGGGGCAGCCATTGGCCATGAAAGATGCTGCTTCAGCCATATTCAACCTATGTCTTGTGCATGAGAATAAAGGGAGGACGGTGCGTGAAGGGGCGGTTCAGGTTATTCTGAACAAGATGATGGACCACATTCTAGTTGATGAGTTATTGGCTATACTGGCATTACTCTCTAGTCATCCCAAGGCTGTTGAAGAAATGGGTGATCTAGGTGCTGTTCCTTTCTTATTGAGTATCATAAGGGAAAGCACGTCAGAGCGAAGCAAGGAAAATTGTGTTGCAATTCTATATACAATCTGTTTTAGTGATAGAACAAAGTGGAAGGAAATTAGAGAAGATGAAAAAGTCAATGGTACACTTTCAAAGCTTGCACAATGTGGAACTTCAAGGGCGAAAAGGAAGGCTAACGGTATTCTTGAAAGGCTTAATAGATCTCCCTCCTTGACCCACACTGCTTAA 1353 0.4605 MAKSESGREVSVSASELKEKLWELVKAIVHTDDYTVQATDEAISTLKSLKDFKSASGTSFSDRLDHFALPPHFRCPISTHLMTDPVILSSGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIQQWCNDRGIELPKPACDIHEVVTDADRDHLNFLLRKLSLSVSDQKEAAKELRRLTKRMPSIRTHFGESSDVILQLLSPLSPGTPCADSDLQEDLITTVLNLSIHDDNKKVFAEDPTVISLLIDALKSGTVQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLDLLHEGQPLAMKDAASAIFNLCLVHENKGRTVREGAVQVILNKMMDHILVDELLAILALLSSHPKAVEEMGDLGAVPFLLSIIRESTSERSKENCVAILYTICFSDRTKWKEIREDEKVNGTLSKLAQCGTSRAKRKANGILERLNRSPSLTHTA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0876 450 SUPERFAMILY RING/U-box 63 145 - -
Apr4g0876 450 SMART Ubox_2 72 135 IPR003613 GO:0004842|GO:0016567
Apr4g0876 450 SMART arm_5 358 399 IPR000225 GO:0005515
Apr4g0876 450 SMART arm_5 236 277 IPR000225 GO:0005515
Apr4g0876 450 SMART arm_5 278 318 IPR000225 GO:0005515
Apr4g0876 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 10 448 - -
Apr4g0876 450 Coils Coil 166 186 - -
Apr4g0876 450 Pfam U-box domain 70 138 IPR003613 GO:0004842|GO:0016567
Apr4g0876 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Apr4g0876 450 CDD RING-Ubox_PUB 73 115 IPR045210 -
Apr4g0876 450 ProSiteProfiles U-box domain profile. 68 142 IPR003613 GO:0004842|GO:0016567
Apr4g0876 450 PANTHER U BOX DOMAIN-CONTAINING 10 448 - -
Apr4g0876 450 Gene3D - 170 447 IPR011989 -
Apr4g0876 450 SUPERFAMILY ARM repeat 172 441 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0876 Apr-Chr4 7101661 7104005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0876 131 450 U-box Gene Family AT3G07360 58.896 1.91e-124 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0876 - - gmx:100806619 688.337