Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0866 ATGTTGAAGCTATCTCGAGCACTGCCTTTCACTTCCACCTGCAGGCTTCGGTTGCTTAGGAAAGCTGAGGTTGGAGACTGTCCAAGGGATCGCCACCATTTTATTTATTCTGCGGCCTTTTCTACTGCTACAAATAATTATTCTGCTAAAGGATATGCTTCAGATCGTATATTTGCTCCTTATTCTGTCTACAAGGGCAAAGCTGCATTCTCGTTGAGTCCTTGTCTTCCTACTTTCACTAAGTTGGATTCTGGGACTGTCGTTGTTGAACGACGCGGTTCAATTATGATGATTTTCATGCATGCCGTTGGGGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTTTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCCTGCGAATTCTTTCATGATCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAATAGCAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAACACCAAAGACAACTTCAGTGTTCCTGTCACAACTGCTGAGTTCGCAGTAATGAAGACAGCTTGCAGTTTCGCGTTGCCACACATTATGGGTTGGGACCGAATTACTAATCAGCAATCCAGGAGCACAGTTGGCCTTCAATCGAAGGCAGGCTCACAAGTTTTAGACTTGGAATGGGATAAGTGA 717 0.4407 MLKLSRALPFTSTCRLRLLRKAEVGDCPRDRHHFIYSAAFSTATNNYSAKGYASDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGTVVVERRGSIMMIFMHAVGERKYDWEKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANSNGYFVSLTVVNNLLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRITNQQSRSTVGLQSKAGSQVLDLEWDK* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0866 238 Gene3D Transcriptional Coactivator Pc4; Chain A 47 220 IPR009044 GO:0003677|GO:0006355
Apr4g0866 238 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 238 IPR013742 GO:0003697|GO:0006355|GO:0006952
Apr4g0866 238 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 238 - -
Apr4g0866 238 Pfam Whirly transcription factor 63 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
Apr4g0866 238 SUPERFAMILY ssDNA-binding transcriptional regulator domain 54 218 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0866 Apr-Chr4 6989147 6992356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0866 41 238 Whirly Transcription Factor Family AT1G71260 62.927 9.75e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Apr4g0866 Whirly 4.2e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0866 - - var:108343725 387.111