Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0862 ATGGTTTGGAAAAGCATGGAAAGAGGGTTGTCTCCTTTGTTGTTTATGCTGTTGGTTTTTTCTGTTTCTGCAATCGACGTGGAATATGCACATTGCAGTTGTGATGAGGAAGGGATTTGGAGTATACAGAGCATTCTGGTTTGCCAGAAAGTAAGCGATTTCTTCATTGCTATTGCATACTTTTCCATACCCATTGAGCTTCTTTACTTTGTCAGCTGCTCCAATGTTCCCTTCAAATTGGTCTTCCTTCAATTCATTGCCTTCATAGTCCTCTGTGGATTGACCCATTTACTCAATGCCTATACATACTACGGACCTCACTCTTTCCACTTGTTTCTTTCCCTTACCGTTGCTAAATTCCTCACTGCTCTTGTCTCCTGTGCCACTGCTATTACCTTTCCCACTCTCATTCCTCTTCTTCTCAAAATCAAAGTGAGGGAACTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCCAGCTGGCATGTTAGGATGTTGACTCGTCAGATTAGGAAGTCTCTAGATAAGCATACCATCTTGCATACCACCCTTGTTGAGCTCTCCAAGGCCTTGGACTTGCATAATTGTGCGGTTTGGACGCCTGATGAGGACAGGCGAGAAATGCATTTGACTCATGAGGTGAAACGAAGCTCACCAAATAATTTTCACAGTTCTATTCCTATAAATGATCCAGACGTGTTGGAGGTAGAGAAGAGCAAAGGGGTGTGGATTTTGAGACCTGATTCTGCACTAGGAGCTGCAAGTAGTGGTCGATCCGAGAATTCTGGTCCTATAGCTGCCATTCGCATGCCAATTCTTCATGTTTCGAATTTCAAAGGAGGGACACCAGAGTTGGTTGAAACATCTTATGCCATACTGGTTTTGGTTCTTCCAAATTCAAACTCAAGGGATTGGACCTCCCATGAAATGGAGATAATGGAAGTAGTTGCTGACCAGGTGGCTGTAGCCTTGTCTCATGCTTCCGTTCTTGAAGAGTCCCAGCTTATGAGCCAGAAACTTGCTGAGCAAAACCGGGCTTTGCAACAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGAGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAGTGTAAGATCTGAACAGAAGATTGTTATTGACTCAATGTTGAAAGTTAGCAATGCGCTCTCAAGGTTGATTAATGATGTAATGGAGATTTCAGCAAATGACAAAGGAAGCTTCAAATTAGAGATGAAACCTTTCCATCTTCATTCGATGATGAGGGAAGCTTCTTGTATTGCCAAGTGTTTGTGTGTATATAAAGGCTTCAGTCTTGATGTTGATGTTGACAAGTCTTTGCCTGATCTGGTCATAGGTGATGAGGCAAGGTCTTTTCAAGTAATTTTGCATATGGTTGGCTATTTATTGAACATATATGATAGAGGGACTCTCATTTTTCGAGTTTTTTCTGAAAGTGATAGTGGAGATAAAGATGATAAAAGTTTTGGAACATGGAGATCAACCATGCAAAATGATTATGTACATATAAAATTTAATTTTGAGATAGCTGGTATTAGTTCCCAGTCCCACTCAGAGTCAATTTCAACAATAAATTATACCGGTAGAAGGCACTACAACAATGAAACTAAGGAGGGCCTAAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCATGGTAATATTCGGATATCACCAAACTCTCTGGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCGTATAGGATCATCGCTTGGAAGATTCATTCTTGCTCCTAAAGATTTTTCAAACCCGCAGTTTAGAGGGCTTAAGGTCGTGTTAGCCGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACTGCTGTTCCATCAGGTTTCGAATGTTTGGGTGCTATAAGTGCCTCTGGTAACTCATTCAAAATTATCCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAGTTTCAAAGCCGTAATTGGCCCTTGATTATAGCTTTTACTGCAAGTGCAGAAGAACGCATAAAGGAGAGATGCTTACAAGTGGGAATGAATGGATTGATTCGAAAACCCATCCTCCTCCATGATATAGCAGATGAACTTAGAACAGTCCTGCAACGTGCAGGTGAAAAACTGTAA 2259 0.4183 MVWKSMERGLSPLLFMLLVFSVSAIDVEYAHCSCDEEGIWSIQSILVCQKVSDFFIAIAYFSIPIELLYFVSCSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFHLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTRQIRKSLDKHTILHTTLVELSKALDLHNCAVWTPDEDRREMHLTHEVKRSSPNNFHSSIPINDPDVLEVEKSKGVWILRPDSALGAASSGRSENSGPIAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNSRDWTSHEMEIMEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQARSSFEKVMSHGMRRPMHSILGLLSMFQEDSVRSEQKIVIDSMLKVSNALSRLINDVMEISANDKGSFKLEMKPFHLHSMMREASCIAKCLCVYKGFSLDVDVDKSLPDLVIGDEARSFQVILHMVGYLLNIYDRGTLIFRVFSESDSGDKDDKSFGTWRSTMQNDYVHIKFNFEIAGISSQSHSESISTINYTGRRHYNNETKEGLSFSMCKTLVQMMHGNIRISPNSLGLAQGMTLLLKFRIGSSLGRFILAPKDFSNPQFRGLKVVLADDDDVNRTVTKKLLEKLGCQVTAVPSGFECLGAISASGNSFKIILLDLHMPEMDGFEVARRIRKFQSRNWPLIIAFTASAEERIKERCLQVGMNGLIRKPILLHDIADELRTVLQRAGEKL* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0862 752 Gene3D - 626 751 - -
Apr4g0862 752 Gene3D - 174 346 IPR029016 -
Apr4g0862 752 Pfam GAF domain 188 335 IPR003018 GO:0005515
Apr4g0862 752 SUPERFAMILY GAF domain-like 189 338 - -
Apr4g0862 752 Gene3D - 427 605 IPR036890 -
Apr4g0862 752 PANTHER TWO-COMPONENT HISTIDINE KINASE 13 745 - -
Apr4g0862 752 SMART HisKA_10 361 426 IPR003661 GO:0000155|GO:0007165
Apr4g0862 752 Coils Coil 738 752 - -
Apr4g0862 752 ProSiteProfiles Histidine kinase domain profile. 368 606 IPR005467 -
Apr4g0862 752 CDD REC_ETR-like 626 741 - -
Apr4g0862 752 CDD HisKA 359 421 IPR003661 GO:0000155|GO:0007165
Apr4g0862 752 PIRSF Ethylen_sen_hybr_HK 5 752 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Apr4g0862 752 PANTHER ETHYLENE RECEPTOR 13 745 - -
Apr4g0862 752 Pfam Response regulator receiver domain 628 739 IPR001789 GO:0000160
Apr4g0862 752 CDD HATPase_ETR2_ERS2-EIN4-like 467 600 - -
Apr4g0862 752 SUPERFAMILY CheY-like 622 747 IPR011006 -
Apr4g0862 752 ProSiteProfiles Response regulatory domain profile. 627 745 IPR001789 GO:0000160
Apr4g0862 752 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 430 588 IPR036890 -
Apr4g0862 752 SMART gaf_1 186 345 IPR003018 GO:0005515
Apr4g0862 752 Pfam His Kinase A (phospho-acceptor) domain 362 425 IPR003661 GO:0000155|GO:0007165
Apr4g0862 752 Coils Coil 341 361 - -
Apr4g0862 752 Gene3D - 348 426 - -
Apr4g0862 752 SMART REC_2 626 741 IPR001789 GO:0000160
Apr4g0862 752 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 350 426 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0862 Apr-Chr4 6954907 6959065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0862 26 750 Miscellaneous Gene Families AT3G04580 60.910 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr4g0862 GAF 6.3e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0862 K14509 - gmx:100805023 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0862 4 6954907 6959065 Apr4g0862 4 6954907 6959065 ECH