Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0860 ATGAGCTTTATAATCCATTGTTGCGCCCCTTTTGTTCATCATTTCAAGCTTCAACCTCAGGCTCGAGCCGAAGGCAGAGAAAGTAGTATGAAGATGAGAAATCCAAAAGTTTTCTTTGATATTGTAATTGGAAGGATGAAAGCTGGGCGAGTAGTGATGGAGTTGTCTGCTGATGTCACCCCAAAAACAGCCGAAAACTTCAGAGCTCTCTGCACCGGGGAAAAGGGGATTGGGAGAGGTGGAGATTTTACCAGGGGGAATGGGACTGGGGGAGAGTCCATTTATGGTTCCAAATTTGAAGATGAAAACTTCCAGTTGAAGCATACTGGCCCAGGCATTCTTTCCATGGCTAATGCTGGGCCCCATACAAATGGTTCTCAGTTCTTCATATGCACTGCAATTACACCGTGGCTTGATGGAAAACATGTAGTGTTTGGAAAAGTTGTAGATGGTTTCAATGTAGTGAAGAAGATGGAGCAAGTGGGTTCGGGAAGTGGTCAGACGTCGGAAATTGTGGTAATAGAAGATTGTGGGCAGATAGCAGATAACTAA 552 0.4457 MSFIIHCCAPFVHHFKLQPQARAEGRESSMKMRNPKVFFDIVIGRMKAGRVVMELSADVTPKTAENFRALCTGEKGIGRGGDFTRGNGTGGESIYGSKFEDENFQLKHTGPGILSMANAGPHTNGSQFFICTAITPWLDGKHVVFGKVVDGFNVVKKMEQVGSGSGQTSEIVVIEDCGQIADN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0860 183 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 179 IPR002130 GO:0000413|GO:0003755
Apr4g0860 183 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 45 178 IPR002130 GO:0000413|GO:0003755
Apr4g0860 183 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 30 182 - -
Apr4g0860 183 PIRSF Peptidylpro_ismrse 25 183 IPR024936 GO:0003755
Apr4g0860 183 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 30 182 - -
Apr4g0860 183 Gene3D - 23 183 IPR029000 -
Apr4g0860 183 SUPERFAMILY Cyclophilin-like 30 180 IPR029000 -
Apr4g0860 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Apr4g0860 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 127 IPR002130 GO:0000413|GO:0003755
Apr4g0860 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 139 IPR002130 GO:0000413|GO:0003755
Apr4g0860 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 155 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0860 Apr-Chr4 6942331 6943879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0860 49 175 U-box Gene Family AT5G67530 42.657 9.74e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0860 K01802 - gmx:100306275 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0860 4 6942331 6943879 Apr4g0860 4 6942331 6943879 ECH