Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0859 ATGGATTCGTCTTTCATTTTTTCAAACTCAAACCTTGAATTTCCCTTCCTTCCTTTCAACGAAAATGACTCAGAGGAAATGCTTCTTTACGAGGTTCTGGCAGAGGCTGGTGCAGAGTCTTTGGAATCAGCAACAGCAGAGTCTCATGAATCGAGTTCCCCCGTTTCATACAGAGGAGTTCGAAGGAGGCCGTGGGGGAAGTTCGCCGCAGAGATAAGGGACTCAACGAGGAACGGAGAGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTTTGGCTTACGACCAAGCTGCGTTAGCAATGCGCGGGTCAATGGCTGTGTTGAATTTCCCAGCCGAAATGGTTCACCAATCACTTCAGAACATGAACTATGATTATGATGCTTTTCATGGAGGCCTCTCTCCCGTTTTGGAGTTAAAAAAGAGACACTCCATTCAGAGAAAATTGCAGAGAAAGAAGGTTAAAAAATATGCAAAATGTTGA 492 0.4614 MDSSFIFSNSNLEFPFLPFNENDSEEMLLYEVLAEAGAESLESATAESHESSSPVSYRGVRRRPWGKFAAEIRDSTRNGERVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVHQSLQNMNYDYDAFHGGLSPVLELKKRHSIQRKLQRKKVKKYAKC* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0859 163 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Apr4g0859 163 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Apr4g0859 163 PANTHER DNA-BINDING DOMAIN 16 159 IPR044808 GO:0003700|GO:0009873
Apr4g0859 163 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Apr4g0859 163 Gene3D AP2/ERF domain 56 116 IPR036955 GO:0003700|GO:0006355
Apr4g0859 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 159 - -
Apr4g0859 163 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Apr4g0859 163 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Apr4g0859 163 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Apr4g0859 163 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0859 Apr-Chr4 6937286 6937777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0859 17 158 AP2-EREBP Transcription Factor Family AT3G23240 56.081 2.57e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr4g0859 AP2 5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0859 K14516 - gmx:100787732 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0327 8 2722490 2723189 Apr4g0859 4 6937286 6937777 ECH
Apr4g0859 4 6937286 6937777 Apr4g0859 4 6937286 6937777 ECH
Apr4g0859 4 6937286 6937777 Apr8g0326 8 2700535 2702067 PCT