Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0849 ATGACGAGAACTCCTTGCTGTGAGAGGATGGGGTTGAAGAAGGGACCTTGGACCACTGAAGAAGATCAGATATTAATTTCTCATATTCAACGATATGGCCATGGAAATTGGCGTGCGCTTCCTAAACAAGCTGGTTTGCTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATTAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAACATACCATCCTAAAGCTACATGAAATTCTTGGAAATAGATGGTCTGCTATAGCTGCAAGATTACCCGGACGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATTGAGAAAAGTGGAGTGTACAATGCCAATAATTCCTCAAATATTTTGCAAAAGGCACAAGCAAATGGTTCTGGGGCTCTAATGACAATGCCCCGTGTAACAGCGGATTCATCAAGTGCTGCTTCTAGTTCTAGTGTCACCGAAAACGTAGTGATTGCAAACTATGATTTATCTTCAAGGAAAAATCCACCTATTGTAGGTACGGGATTCTACACTGCAGTCTCTTCAGGAGAAACCATGGATAATAATCATGGTTCTAGTCACATTAGTGAAGAAATGGAATTTTGGTACAATGTATTCATCAAATCAGGGCAACCATCATGA 669 0.4066 MTRTPCCERMGLKKGPWTTEEDQILISHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEHTILKLHEILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRIEKSGVYNANNSSNILQKAQANGSGALMTMPRVTADSSSAASSSSVTENVVIANYDLSSRKNPPIVGTGFYTAVSSGETMDNNHGSSHISEEMEFWYNVFIKSGQPS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0849 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr4g0849 222 CDD SANT 69 112 IPR001005 -
Apr4g0849 222 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Apr4g0849 222 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Apr4g0849 222 SMART sant 13 63 IPR001005 -
Apr4g0849 222 SMART sant 66 114 IPR001005 -
Apr4g0849 222 CDD SANT 16 61 IPR001005 -
Apr4g0849 222 Gene3D - 68 139 - -
Apr4g0849 222 Gene3D - 13 66 - -
Apr4g0849 222 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g0849 222 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g0849 222 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g0849 222 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr4g0849 222 PANTHER MYB TRANSCRIPTION FACTOR 1 220 - -
Apr4g0849 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0849 Apr-Chr4 6837750 6838708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0849 1 215 MYB Transcription Factor Family AT2G31180 48.117 7.42e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0849 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0849 K09422 - gmx:102663040 340.502