Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0843 ATGGCCCCCAATCCAAGAGTTAATAAGGCTTTTAGCTTTACGAGGGCCTTGGGAATTTCTAATGAGGAGGTGAAGCCCGTGTTGATAAAGCTGTTAAGAATTTATGACGGAAACTGGGAACTTATTGAAGATGACAATTATCGGACACTTGTAGATGCATACATTGATTTTAAGGAAGATAAGGGAGTTGAAGGTAAGAGAAAAACTCATTCCAGTTGTGGGGTTGGAGATAAACCAAGAAGGAAACTGCTCTTGGCAGATGAAGAAGACCAGGCTTTATCACCCAATGACAACTCAAGCCAAATGTCATATGCAGAAGACAACAAAATATCACGGAAGACTTCTCAAATGAAAACCACTGAACCATCTCAAACAGTCATGGAAGATATTAAGCGCAAAACCAGTTCACAAGCATCACACACAAAGTTGAGTGAGGTAGAAAAGATCTCAAATTTACCTTGCGTGGCAGCTAAAGATAAAATATCATATCCTGAGAAAGCCTCATCAGCAGAGCCTTGTGGTCATTTTGAGAAAGAGTTTGTGAAGCCAAAAACTAAGAAACCTAGGTCCCAATTTACTTCAACAAATCGTAATGGTTTATCTGGTGCTTCAAATGGAGATCTGTGTGTCAAATCTCTGTCAACTCAGGATCAGGATGTGCAAAGTAAAGATGTTGGATCATCATGCAACAATAATACCGCAGCATATAATGGAAATATTATGATTGGTTCTTCAGATAAGGGAGAAGTTAAAATATCTTTAAATTGCAACTCTGCCTTGGGACAACCCAACTTCTGTATTCCTAATTTGGATGTTGTTATGAGGTTCATGGACAAGAAGTATCTTAGCTCTTGCAACACTGTTGGGCCCCAACTTTCTATGGCGAAGCTATTAGATGACCTTTGCAGGAGTTATCTCAAGTTGGGATATCGAAAGATATCAAATTCCAAGCATGCCACGTCACAGCAATCTGTTAATCAAGGTGAAGGGAATTCCTTTCATTTTATCATTGACATAACAAAAGGGTCAGAAGAGGTGAAAATATCATTAATAGATGAATTTGGAAATGATGACTTGCCAAAGTTTAATTACATACCATGTAGTATAATATATCAAAGTGCTAGTGTAAATATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAAACGACTGTCTTTCCTCGTCATTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACACCACAAGGTTTGTTGAAAGAAGAATTTCTAACAGCTTGTATGTCTATGAAGAATGAACCTCAAGATCATCATTTGGTGTACTGTCAAGAGTGCCCATTGGAGAAGTCCAAGAATGAGTACATGCCCGAACGATGCAAAGGACATCTGGTTAGGAAGTTTATAAAGGAATGTTGGATGAAATGTGGATGTGGCATGCATTGCGGAAATCGGATAGTGCAACGAGGAATAAGGTGCAAATTACAAGTGTTCTCAACTCGTGAAGGTAAAGGGTGGGGCCTTAGACCGCTAGAAGATTTACCAAAGGGAACTTTTGTATGTGAATATGTTGGTGAAATATTAACCAATATGGAGTTGTACGATAGGATTGTAAACAATAGTGGCACTGGCAATGACAGACATACATATCCTGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGTGTTAAAGGATGAGGAGGCGCTATGTTTAGATGCAACATATAATGGAAATGTTGGAAGATTCATCAATCATAGATGCTATGATGCAAATCTCATAGATATTCCTGTTGAAGTGGAGACTCCCGATCATCACTATTATCATCTTGCCTTCTTTACCAACAGGAAAGTGAGTGCATACGAGGAGTTGACATGGGATTATGGTATTGATTTTGACGATCACGACCATCCTATTAAAGCATTTCAGTGTCGTTGCGGAAGCGCCTTCTGCTGTGATAAGAAACGAAAAGGTTTACTCAAGTAG 1989 0.3967 MAPNPRVNKAFSFTRALGISNEEVKPVLIKLLRIYDGNWELIEDDNYRTLVDAYIDFKEDKGVEGKRKTHSSCGVGDKPRRKLLLADEEDQALSPNDNSSQMSYAEDNKISRKTSQMKTTEPSQTVMEDIKRKTSSQASHTKLSEVEKISNLPCVAAKDKISYPEKASSAEPCGHFEKEFVKPKTKKPRSQFTSTNRNGLSGASNGDLCVKSLSTQDQDVQSKDVGSSCNNNTAAYNGNIMIGSSDKGEVKISLNCNSALGQPNFCIPNLDVVMRFMDKKYLSSCNTVGPQLSMAKLLDDLCRSYLKLGYRKISNSKHATSQQSVNQGEGNSFHFIIDITKGSEEVKISLIDEFGNDDLPKFNYIPCSIIYQSASVNISLARISDEGCCSDCSNDCLSSSLPCACAQETGGEFAYTPQGLLKEEFLTACMSMKNEPQDHHLVYCQECPLEKSKNEYMPERCKGHLVRKFIKECWMKCGCGMHCGNRIVQRGIRCKLQVFSTREGKGWGLRPLEDLPKGTFVCEYVGEILTNMELYDRIVNNSGTGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVGRFINHRCYDANLIDIPVEVETPDHHYYHLAFFTNRKVSAYEELTWDYGIDFDDHDHPIKAFQCRCGSAFCCDKKRKGLLK* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0843 662 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 660 - -
Apr4g0843 662 Pfam Ubiquitin-binding WIYLD domain 6 54 IPR018848 GO:0018024
Apr4g0843 662 SMART preset_2 336 478 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g0843 662 Gene3D SET domain 339 655 IPR046341 -
Apr4g0843 662 Gene3D - 1 60 IPR043017 -
Apr4g0843 662 ProSiteProfiles Pre-SET domain profile. 392 491 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g0843 662 SUPERFAMILY SET domain 346 652 IPR046341 -
Apr4g0843 662 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 658 IPR025776 -
Apr4g0843 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 660 - -
Apr4g0843 662 Pfam SET domain 506 630 IPR001214 GO:0005515
Apr4g0843 662 SMART set_7 494 636 IPR001214 GO:0005515
Apr4g0843 662 Pfam Pre-SET motif 339 486 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g0843 662 MobiDBLite consensus disorder prediction 92 124 - -
Apr4g0843 662 CDD SET_SETDB-like 360 630 - -
Apr4g0843 662 MobiDBLite consensus disorder prediction 86 142 - -
Apr4g0843 662 ProSiteProfiles SET domain profile. 494 630 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0843 Apr-Chr4 6791877 6802872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0843 470 661 C2H2 Transcription Factor Family AT2G23740 39.594 1.21e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr4g0843 Pre-SET 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0843 - - gmx:100802372 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0843 4 6791877 6802872 Apr8g0363 8 3063216 3069559 PCT