Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0825 ATGACTCCCGATGCTTCTGACGCACTTGCAGTGAGGCACAAAGTTCAGTTATTCCTCAATGCCGCTCGCACTGGAAATCTCGATCTCTTCAAGAATTTGGCGGAGCAGTTGAACGAGGGCAAGGATTTAGCCAAAACAGTGGAAGCAATTAAGGATGCTAACAAGCGAGGGGCACTGCATTTTGCTGCTCTTGAAGGCCACACCAATGTCTGCAACTACCTTTTACACCATTTGAACATTCCCGTCGATTCTCAAGATGACGAAGGCAAGACTGCTCTCATTCATGCTGCTCATAGAGGACACACTGATACTGCTAAATGTCTGATTGACCATGGTGCTGATCCCACTGTGGCTAGCAACCTAGGTGCTACGGCTTTGCACCATTCTGCAGGGATAGGAGATACTGAGCTGCTGAAGCATTTGCTGTCCAGGGGAATTAATCCTGACTTAGAAAGCGATGCAGGAACGCCGTTGGTTTGGGCTGCCGGTCATGCCCAGCCAGCGGCTGTCACTGTTTTGTTAGAACATGGAGCAAATCCTAATGCTGAAACTGATGATGGTATTACTCCCCTACTTTCTGCTGTGGCAGCCGGATCTCTGGCATGCTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGTAAATATAAGTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGAAGTCTAGAACTAATAAATTGCTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGACGAGGATGGTGTTAAGCCAATTCAGGTTGCAGCTGCAAGGGGCAATCGTGGAGCAGTTGAGATATTGTTCCCCTTGACTTCCAAAATTGATACAGTTCCTACTTGGACTATTGATGGGATACTTGAGTATATGCAATCTGAAACTAAAAAGCAACAGGATGAATTTGTAAATGCTAAAGAAATTAATCGGCCCAAGGATGCTGCTTTTCAGGAGCAAAATGTCCCAGAGGTAGCACCTGAAGCCAAAAAGAGAGCAGCAGAAGCAAAGTCGAGAGGGGATGAGGCCTTTAAAAGGAAGGACTATCACATGGCAATAGATTCTTATACACAGGCAATTGATCTGAACCCCGCTGATGCTACTTTGTTATCCAATAGAAGTCTCTGCTGGATTAGGTTGGGGCAAGCTGAGCATGCTTTAGCTGATGCAAAGGCTTGCAGAGCATTAAGACCAGATTGGCCAAAAGCTTGTTACAGGGAAGGGGCAGCTTTGCGTGTATTGCAGAAATTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCTGAAAATAAGGAGCTTGTAAATGCATTCAGGGAAGCTGTCGAAGCTGGGAGGAAATTTCATGGCACAGCTGAGAATAAATCATAG 1383 0.4563 MTPDASDALAVRHKVQLFLNAARTGNLDLFKNLAEQLNEGKDLAKTVEAIKDANKRGALHFAALEGHTNVCNYLLHHLNIPVDSQDDEGKTALIHAAHRGHTDTAKCLIDHGADPTVASNLGATALHHSAGIGDTELLKHLLSRGINPDLESDAGTPLVWAAGHAQPAAVTVLLEHGANPNAETDDGITPLLSAVAAGSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELINCLLKAGADPNVSDEDGVKPIQVAAARGNRGAVEILFPLTSKIDTVPTWTIDGILEYMQSETKKQQDEFVNAKEINRPKDAAFQEQNVPEVAPEAKKRAAEAKSRGDEAFKRKDYHMAIDSYTQAIDLNPADATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRVLQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGTAENKS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0825 460 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Apr4g0825 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 457 - -
Apr4g0825 460 ProSiteProfiles Ankyrin repeat region circular profile. 186 215 - -
Apr4g0825 460 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Apr4g0825 460 Pfam Ankyrin repeats (3 copies) 170 249 IPR002110 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Apr4g0825 460 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Apr4g0825 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 457 - -
Apr4g0825 460 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Apr4g0825 460 Gene3D - 10 122 IPR036770 -
Apr4g0825 460 Gene3D - 188 273 IPR036770 -
Apr4g0825 460 SUPERFAMILY Ankyrin repeat 19 273 IPR036770 -
Apr4g0825 460 Pfam Tetratricopeptide repeat 341 367 IPR019734 GO:0005515
Apr4g0825 460 SUPERFAMILY TPR-like 333 445 IPR011990 GO:0005515
Apr4g0825 460 SMART tpr_5 402 435 IPR019734 GO:0005515
Apr4g0825 460 SMART tpr_5 334 367 IPR019734 GO:0005515
Apr4g0825 460 SMART tpr_5 368 401 IPR019734 GO:0005515
Apr4g0825 460 PRINTS Ankyrin repeat signature 89 104 IPR002110 GO:0005515
Apr4g0825 460 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Apr4g0825 460 Gene3D - 123 187 IPR036770 -
Apr4g0825 460 Gene3D Tetratricopeptide repeat domain 332 447 IPR011990 GO:0005515
Apr4g0825 460 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Apr4g0825 460 SMART ANK_2a 251 280 IPR002110 GO:0005515
Apr4g0825 460 SMART ANK_2a 218 247 IPR002110 GO:0005515
Apr4g0825 460 SMART ANK_2a 54 82 IPR002110 GO:0005515
Apr4g0825 460 SMART ANK_2a 121 150 IPR002110 GO:0005515
Apr4g0825 460 SMART ANK_2a 88 117 IPR002110 GO:0005515
Apr4g0825 460 SMART ANK_2a 153 182 IPR002110 GO:0005515
Apr4g0825 460 SMART ANK_2a 186 215 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0825 70 282 Ion Channels AT2G25600 28.800 4.24e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0825 - - gmx:100793914 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0825 4 6643762 6648961 Apr4g0825 4 6643762 6648961 ECH