Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0821 ATGATCAATTTCGAAGAAACCGAGTTGCGACTCGGTCTGCCATTGAGTGGAAATGAAGGCGAGTCGGCGCTCAAAACCACACCTTCTAGTGCTGCCTGTAATGGAAAGAGGGGTTTTTCGGAGACGAGTGGTAGTAGCGTCGATTTGAAGCTTAATCTTTCTAATGCGTTGCCTTCTGCCTCTTCTCAAGCGCCTAAAGACAAAACCACTCCTCCTCGCGCTAACGACCCACCAGCAAAGGCACAAGTGGTGGGTTGGCCACCTGTGAGGTCATTTAGAAAGAACATTGTTAACGTTCAAAGGAGCAACAACAATAACAATGGAGGCGAAAAAGTTGGCACTGCAACAACAGGAACCACGAGTAACAACAACGGCAGTGTGGCAGGAGCTTTCGTGAAGGTGTGCATGGATGGTGCTCCTTATCTACGCAAAGTGGACTTGAAGTTGTACAAGAGCTACCAAGAGCTTTCCGATGCACTCGTTAAAATGTTCAGTTCCTTCACCGTTGATAAATGTGGTTCCCAAGGCACTAAGGACTTTATGAATGAGACCAAATTGATAGATCTTCTCAATGGCTCTGATTACGTACCAACCTATCAAGACAAAGATGGAGACTGGATGCTCGTTGGTGACGTTCCCTGGGAGATGTTCGTGGAATCATGCAGGCGCCTGCGCATAATGAAAGGGTCTGAGGCAATTGGGCTGGCACCAAGAGCGGTGGAGAAGTGCAAGAATAAGCTGAAGTCATATTTGTAA 756 0.4735 MINFEETELRLGLPLSGNEGESALKTTPSSAACNGKRGFSETSGSSVDLKLNLSNALPSASSQAPKDKTTPPRANDPPAKAQVVGWPPVRSFRKNIVNVQRSNNNNNGGEKVGTATTGTTSNNNGSVAGAFVKVCMDGAPYLRKVDLKLYKSYQELSDALVKMFSSFTVDKCGSQGTKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCRRLRIMKGSEAIGLAPRAVEKCKNKLKSYL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0821 251 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 240 - -
Apr4g0821 251 Pfam AUX/IAA family 6 238 IPR033389 -
Apr4g0821 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 240 IPR003311 GO:0005634|GO:0006355
Apr4g0821 251 MobiDBLite consensus disorder prediction 20 69 - -
Apr4g0821 251 ProSiteProfiles PB1 domain profile. 129 229 IPR000270 GO:0005515
Apr4g0821 251 Gene3D - 124 241 - -
Apr4g0821 251 MobiDBLite consensus disorder prediction 100 120 - -
Apr4g0821 251 MobiDBLite consensus disorder prediction 13 83 - -
Apr4g0821 251 SUPERFAMILY CAD & PB1 domains 129 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0821 Apr-Chr4 6624685 6627160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0821 133 248 B3 DNA Binding Superfamily AT3G61830 33.621 1.98e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr4g0821 AUX_IAA 4.6e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0821 K14484 - gmx:100796888 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0821 4 6624685 6627160 Apr8g1525 8 24682373 24685280 ECH
Apr4g0821 4 6624685 6627160 Apr4g0821 4 6624685 6627160 ECH