Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0819 ATGGCGGGTAATTGCACGGAGGGTTTAGGTGATGATTTTTTGGAGCAGATGTTGGTATTACCTTCAGTGTATAGCGAGAGTGGTGGGTACGACTTTGGGAGGAGCGTAGGAAGCATGGCAATAGGTGTGGGCATGCCTTTGGAGTTTAATTTGGAGCATGGCTTTCTCAGACACCAACAAAGTAGTGTTGGTGGTAATGACTACGATCACCTTCCTCTCAATAATGCTAACAACACCACTACCTCATCCTCTTCTTCTTCAGGAATCACTGAAAGGGATTCGATGCATATGAGGGGTCTGTATACAACGTTGGGACAGCTGCATGGTCACGGCGGTGCCCAATCTACGGTGCCGTCTCCTGCTCCATTACTTCCGCCGCATCACCGTCAGTTGCAGCCCCATCATGGGCAGCCACCAGCTCCAGTATCTGTTGCTGCTGTTCCACAAGCAAGTGGCATACGCCCTCGAGTGCGAGCAAGAAGAGGTCAAGCCACAGATCCACACAGTATTGCTGAGCGATTACGTCGTGAAAGAATCGCTGAAAGAATGAAGGCCTTGCAGGAACTAGTTCCCAGCGCCAATAAGACGGACAGAGCAGCCATGCTTGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTCCAGGTTAAGGTCCTTAGCATGAGTAGATTGGGAGGAGCTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTTCCCCTTCTGCATTGGAGGGTGAGGACATAGTAGGTGGAGCCAATAAGCAAGCTTGGGACAAGTGGTTCAATGATGGCACAGAACAGGAAGTTGCTAAACTTATGGAAGAAGATGTTGGAGCTGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCGTCATGCCAATATCTCTAGCATCAACCATTTTTGGTACTTCCATATCAGAACCACCATCACTCCTCACGCCTGAATCAAACAGTTGA 954 0.4885 MAGNCTEGLGDDFLEQMLVLPSVYSESGGYDFGRSVGSMAIGVGMPLEFNLEHGFLRHQQSSVGGNDYDHLPLNNANNTTTSSSSSSGITERDSMHMRGLYTTLGQLHGHGGAQSTVPSPAPLLPPHHRQLQPHHGQPPAPVSVAAVPQASGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVSPSALEGEDIVGGANKQAWDKWFNDGTEQEVAKLMEEDVGAAMQFLQSKALCVMPISLASTIFGTSISEPPSLLTPESNS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0819 317 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 307 - -
Apr4g0819 317 SMART finulus 169 218 IPR011598 GO:0046983
Apr4g0819 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Apr4g0819 317 Gene3D - 158 220 IPR036638 GO:0046983
Apr4g0819 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983
Apr4g0819 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 307 - -
Apr4g0819 317 MobiDBLite consensus disorder prediction 108 143 - -
Apr4g0819 317 Pfam Helix-loop-helix DNA-binding domain 168 212 IPR011598 GO:0046983
Apr4g0819 317 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0819 Apr-Chr4 6602527 6607673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0819 135 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 70.109 1.73e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0819 HLH 8.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0819 - - aprc:113863260 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0819 4 6602527 6607673 Apr8g1523 8 24596296 24601848 ECH
Apr4g0819 4 6602527 6607673 Apr4g0819 4 6602527 6607673 ECH