Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0817 ATGGAAAGGGTGTTGTCAGTAGATGAAATATCGGAACAGTATTGGGTGGCAGCGAGGAATGAATCGTGCAAGTCAAAGTCAAAGATGAATCGGAGCGATTCTGAGTGGGCCTTTCAGCAGTTTCTAAAGGAAGCAGCTTCTTCTTCTTCATCCTCTTCTTCATCATCATCCATTGATGTCAAACTCAAGAAGGATCCAAGCGCCAACCACCCTGTAACTGTTGATTCTGAGGACTACCACGCTATTCTCAAGACCAAGCTCAATCTCGCTTGCGCCGCCGTTGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAGACCCTGACAGTGGATCACAGGCATCTAATCCTTCTGAAGTTGGATCTCAGGCTACCTTAAAAGGATCTGGCCCTTCTGGAAATGATCCATCGAAAGTTCAAAATAAAGATGTCAAATTACCACTTGGGGTTCCTTCCTCACCTACCATGCAAAAGAATCCTGCTGTTGTGATGATGCCAACATTAAGTGGGTCATCAAAAGAACAGTCAGATGACGAGGAAGCTGAGGGAGAGATTAACATGACTGACAACATGAACCCTGCAGATGTAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTCTCTCAATTAAGAGGCGAGAATTCTTCATTGTTAAAGCGCTTGACTGATGTGAGCCAGGAGTATAATAATGCTGCTGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACGGTGAAAAGAATTACTGGGTTGAACCCAATGTTTCATGGCATGACTGAGATGTCAATGTCATCAATGGGAATGGCATTATATGATGGAAGCCCATCTGAGACATCAGCTGATGCAGCTGTTCCTGTCCAAGAAGACCCAAATCATCACCTTTCTCAACCCACTTCAAATAACAATGGCATTGAAAGTGTGCAGCACAAGAACACTTCCCTACGCCGGGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGAGCAGATTCACGTGCACCTGCTTCTAATGGAGACCAATAA 1119 0.4486 MERVLSVDEISEQYWVAARNESCKSKSKMNRSDSEWAFQQFLKEAASSSSSSSSSSSIDVKLKKDPSANHPVTVDSEDYHAILKTKLNLACAAVALTRGSLVKSQDPDSGSQASNPSEVGSQATLKGSGPSGNDPSKVQNKDVKLPLGVPSSPTMQKNPAVVMMPTLSGSSKEQSDDEEAEGEINMTDNMNPADVKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVSQEYNNAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFHGMTEMSMSSMGMALYDGSPSETSADAAVPVQEDPNHHLSQPTSNNNGIESVQHKNTSLRRVASLEHLQKRIRGGADSRAPASNGDQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0817 372 Coils Coil 254 274 - -
Apr4g0817 372 Gene3D - 195 250 - -
Apr4g0817 372 MobiDBLite consensus disorder prediction 302 372 - -
Apr4g0817 372 CDD bZIP_plant_GBF1 197 248 IPR045314 GO:0003700|GO:0006355
Apr4g0817 372 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 248 IPR004827 GO:0003700|GO:0006355
Apr4g0817 372 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700|GO:0006355
Apr4g0817 372 Coils Coil 205 239 - -
Apr4g0817 372 MobiDBLite consensus disorder prediction 45 62 - -
Apr4g0817 372 PANTHER BZIP TRANSCRIPTION FACTOR 1 355 - -
Apr4g0817 372 MobiDBLite consensus disorder prediction 321 344 - -
Apr4g0817 372 Pfam Basic leucine-zipper C terminal 263 361 IPR020983 -
Apr4g0817 372 SUPERFAMILY Leucine zipper domain 195 248 IPR046347 GO:0003700|GO:0006355
Apr4g0817 372 PANTHER BASIC LEUCINE ZIPPER 63 1 355 - -
Apr4g0817 372 MobiDBLite consensus disorder prediction 102 160 - -
Apr4g0817 372 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Apr4g0817 372 MobiDBLite consensus disorder prediction 345 359 - -
Apr4g0817 372 Pfam bZIP transcription factor 195 248 IPR004827 GO:0003700|GO:0006355
Apr4g0817 372 MobiDBLite consensus disorder prediction 102 138 - -
Apr4g0817 372 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0817 Apr-Chr4 6592532 6597606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0817 1 287 bZIP Transcription Factor Family AT4G02640 40.979 5.66e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr4g0817 bZIP_C 6.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0817 K25784 - gmx:778137 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0817 4 6592532 6597606 Apr4g0817 4 6592532 6597606 ECH
Apr4g0817 4 6592532 6597606 Apr8g1521 8 24587917 24592412 PCT