Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0809 ATGGAGAGCGCACTGCACAGTTCTGGCGATCAAACCCTTCAGGAATTCTTCAAAGTTTTCTTGCTCAAGACTGGTTCTGCCCAGTTGCAAATACCAAAATCATTCACCAAGTTCTTCAATGGAACCACACCATGCAAGGCCACTCTTGTAGACCAAGATATAAACTCTAGGGATGATATTTGCTTGGAGAAAGTCGAGGATCGCTTGGTTTTCAAAAGCGGGTGGGAGCAATTTGCTAAGGAGAAAGGTTTAGAAGAAGGGGACTTCTTGGTTTTTCAGTATGATGGAAACTCTTCGTTTTATGTGAAGATATTTTCGAAAACTGGGTGCAGGAAAGTAGCCGCACCTCCACCTCCACCTGCACCTGCATGTTGCGAAAAAGTTGCTGTTCCCATTGTGATTTTGGATGAAGATTCTAATCTGAATAGTAAGAAAAACCGGCGGGGTCGTAAACGGAAAAATCTATCAACAACAGTCCTTAAAACAAATGAGAATAAAAAACCAGTGTTAGAGGGTCCTTCTGAAGGTGCTCAGAGCAAATTAAATGGAGTTAAAGAAGAAAATGTTAACCGCTATGAGATGAAACCTGATCTGGCAAACTTGGATCCACCGTGGAACCCTCATTTTTCGATATGCTTAACTGCATGGAAACTGAATAGAGTGGAAATTCCTAGACTAGTGCTGAAGAAATTTAATATCATTCTGACCCCAAGGATAAGTATAAGAGATGAGAATGACAATTTATGGCCGGTGGCGATCATCACCACGGCACCTGCCGTCGTCATTTTTTGTCCGATGGATGGTCCAATTTCAGGCGGAGCAACAACATTCACGAAGGTCAATGGTGTGATTTTCAGTTTGTTATTGACAAAGCAAACATAA 882 0.4195 MESALHSSGDQTLQEFFKVFLLKTGSAQLQIPKSFTKFFNGTTPCKATLVDQDINSRDDICLEKVEDRLVFKSGWEQFAKEKGLEEGDFLVFQYDGNSSFYVKIFSKTGCRKVAAPPPPPAPACCEKVAVPIVILDEDSNLNSKKNRRGRKRKNLSTTVLKTNENKKPVLEGPSEGAQSKLNGVKEENVNRYEMKPDLANLDPPWNPHFSICLTAWKLNRVEIPRLVLKKFNIILTPRISIRDENDNLWPVAIITTAPAVVIFCPMDGPISGGATTFTKVNGVIFSLLLTKQT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0809 293 Gene3D - 7 110 IPR015300 -
Apr4g0809 293 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Apr4g0809 293 PANTHER B3 DOMAIN-CONTAINING 8 255 - -
Apr4g0809 293 CDD B3_DNA 16 106 IPR003340 GO:0003677
Apr4g0809 293 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Apr4g0809 293 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 8 255 - -
Apr4g0809 293 SMART B3_2 17 108 IPR003340 GO:0003677
Apr4g0809 293 SUPERFAMILY DNA-binding pseudobarrel domain 15 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0809 Apr-Chr4 6547529 6551827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0809 15 254 B3 DNA Binding Superfamily AT5G66980 30.451 1.97e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr4g0809 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0809 - - aprc:113861577 561.607