Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0807 ATGGGGAAAGCGGGCAAATGGATTAGAAACTTCCTTCTAGGGAAAAGAGAAGAGAAATTCAAGAAGATTGATGCGTGCCACCCTGAGAATAAGGCTATCAACATGGGAAGTCAGATTGTGAATCCCAAAGTGAAGCGCAAATGGAGCTTTGGAAAATTAACAGGTGGAAAGATAACAAGCAAGGTATCAGGTCATAAATTTTCCAGATCTTTTGACTCAGGAGACTCTGCAAAACTGCAAATACAAACCTTGTTGGAAACTCAGACTCCGAGGATTCTTTCAACAGCACTGGCTAAGGTTTGTGAAGACACTGAGTTTGAAACCACAGCTGCTACAAAGATTCAAGCTGCCTTTCGTTCATATTTGGCAAGGAAAGCATTGTATGCTTTAAGGGGACTAGTCAAGTTGCAGGCACTAGTGAGGGGTCACCTTGTAAGGAAACAAACAACAACTACAATGCGTGGCATGCATGCGTTGATGGCCATACAAGTTAGAGCCCGAATTCAAAGAATTCAGATGGCAGAGGAAGCAAATCTCCTCTGGAAACAGCCTATGCAACATAGAGAAATGCCACACTTGAAAGATCTCATAACAGAAGAAAATAAAGATTCGGGCGATATGAGTCTAGAAGAAATGTTGGAGGTTTGGAAAAGTAGAAGTGGCCCTTTAGATGGTTCACACGATAAAAGAGGGCATGATTCTATGACATATTATTCGAAGCATCTGCCAGTTTCCAGACGAGAAAACCAACACAAGAATGCTTTACTAGCAGAATCAAACAGCCAAGGAAACTACCGGGACATGTCTGAATTTAACCTAACCACAATGGCCTTATCAACCTCTCAGCGCCATCCAGTACCCCATCGCCAATCATGGTCACCAAATTACATGAACAAGACAGAATCTTCGAGGGCTAAAGCAAGGTCTCACAGTGAACCAAAACAACGACCCAGATGGGGAATGAGGCACAAAAGCAAGTCTGTGGAATCTCCACGGAATGGTCCAAGACAAAATCTTTTCTCCAATTCGTTACGCTTCGATCATGGAAACCAGGACCATTGCGTTATCAGTCTTCATGGATCAATGAAAGATAGCAAGCGCGATTCCTTCGGCAGCAGCACCGGCACGGTTACTAGTGATTCCTATTATTGA 1152 0.4332 MGKAGKWIRNFLLGKREEKFKKIDACHPENKAINMGSQIVNPKVKRKWSFGKLTGGKITSKVSGHKFSRSFDSGDSAKLQIQTLLETQTPRILSTALAKVCEDTEFETTAATKIQAAFRSYLARKALYALRGLVKLQALVRGHLVRKQTTTTMRGMHALMAIQVRARIQRIQMAEEANLLWKQPMQHREMPHLKDLITEENKDSGDMSLEEMLEVWKSRSGPLDGSHDKRGHDSMTYYSKHLPVSRRENQHKNALLAESNSQGNYRDMSEFNLTTMALSTSQRHPVPHRQSWSPNYMNKTESSRAKARSHSEPKQRPRWGMRHKSKSVESPRNGPRQNLFSNSLRFDHGNQDHCVISLHGSMKDSKRDSFGSSTGTVTSDSYY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0807 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 150 IPR027417 -
Apr4g0807 383 MobiDBLite consensus disorder prediction 303 330 - -
Apr4g0807 383 MobiDBLite consensus disorder prediction 331 346 - -
Apr4g0807 383 MobiDBLite consensus disorder prediction 362 383 - -
Apr4g0807 383 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Apr4g0807 383 PANTHER IQ-DOMAIN 5-RELATED 1 368 - -
Apr4g0807 383 Pfam Protein of unknown function (DUF4005) 280 324 IPR025064 -
Apr4g0807 383 Gene3D - 107 161 - -
Apr4g0807 383 ProSiteProfiles IQ motif profile. 131 158 IPR000048 GO:0005515
Apr4g0807 383 SMART iq_5 129 150 IPR000048 GO:0005515
Apr4g0807 383 SMART iq_5 106 128 IPR000048 GO:0005515
Apr4g0807 383 MobiDBLite consensus disorder prediction 279 346 - -
Apr4g0807 383 MobiDBLite consensus disorder prediction 367 383 - -
Apr4g0807 383 MobiDBLite consensus disorder prediction 279 302 - -
Apr4g0807 383 Pfam IQ calmodulin-binding motif 134 148 IPR000048 GO:0005515
Apr4g0807 383 Pfam IQ calmodulin-binding motif 110 126 IPR000048 GO:0005515
Apr4g0807 383 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0807 Apr-Chr4 6544162 6545670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0807 1 334 IQD Protein Family AT4G14750 34.006 3.98e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0807 - - gmx:100781320 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0807 4 6544162 6545670 Apr4g0807 4 6544162 6545670 ECH