Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0806 ATGGAGCAGTATGACATCCTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCACTTCTCGTGAAGCATAAACATGAGAAGAAAAAATATGTACTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCACGTAGATCTGCACACCAGGAGATGGAGCTCCTGTCCAAATTGAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGCGTAATGTTTCCGGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTACTTCCTCTGTTGTAGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGACATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTGTATATGAAATGGCCTCACTTAAGCCTGCATTCAAAGCATTTGATATACAAGCCCTGATTAACAAGATTAACAAGTCAATAGTGGCCCCGCTGCCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGAGGAAAAACCCAGAGCTTAGGCCTAGTGCTGCTGAACTACTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGATCCATCTCAAAATCAATAGTCCCAGGCGAAGTACATTGCCAGGTCATTGGTCAGAATCAAACTACATGAAGCAAACGAGATTTTTGAAGCCAGAAGATGATCCTGTTTCCATTTCTGGGGACAAGTGGCATTCTTTCAGCAATGATCGGACTTTAAATCCTAATGTATCTGGAGTAGAGCAAGATTCTTTATGCTCTACACTCGAAATAGATTGTACAACTCCTGATCATCTGAATCAAAGATTAGCTGAACTGTCTGTTGGAGACAGCCATGATGCGAAATCAATTCCTAAGCCAGCTGTTTCCAGAACTTCTACTAATGCCAAAACTCCAAGACTCACTCCATCAAAAACTTCTGCTGCTCCCAAGAAATTGATGGAACCCTCAAAGAACCATAAGGCGCTTTCACACAATACAAACCAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTGCCGAGAAGTGGTGCCATTCAGCAACCTCCTCGCAGACCCCGTGCTGGTTTACTTGGCCATGTAAATTCGCCAAATATTTCAGTTAACTCTCCCCGAATTGATAGGATTGCTGAATTCCCATTAGCATCCTATGAAGATCAATTGTTTCCCATCAATAGATCTTCACTAACCTCAGCACAGGGTTCCTCAGGCTCCCCTCCTTGTGGCAATGATTCAACCTTGATAGACAAATGCACAGTTAAAATATGTGACACTTGGCAGGGAATCAAGCGCAGCATGTTCAAGGAAAACGATGAGGACAAAAGTGTCTCATCGAATCAAAATGCGATTGCTGGAGCATCAAGCCATAACTCTTCAGACTTGCACCGCAGACAGTTTGATACTACGTCTTTCCAACAAAGGGCTGAGGCCTTAGAGGGGTTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTACAGAGAACTTGCAGTTTTGTTAAAACCATTTGGGCCAGGGAAAGCTTCCCCGCGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAAAACACTTTCAACCGGGAATAA 1824 0.4282 MEQYDILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMASLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPRRSTLPGHWSESNYMKQTRFLKPEDDPVSISGDKWHSFSNDRTLNPNVSGVEQDSLCSTLEIDCTTPDHLNQRLAELSVGDSHDAKSIPKPAVSRTSTNAKTPRLTPSKTSAAPKKLMEPSKNHKALSHNTNQPVHTTRRASLPLPRSGAIQQPPRRPRAGLLGHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSLTSAQGSSGSPPCGNDSTLIDKCTVKICDTWQGIKRSMFKENDEDKSVSSNQNAIAGASSHNSSDLHRRQFDTTSFQQRAEALEGLLEFSARLLQQERYRELAVLLKPFGPGKASPRETAIWLSKSFKENTFNRE* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0806 607 MobiDBLite consensus disorder prediction 396 411 - -
Apr4g0806 607 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Apr4g0806 607 CDD STKc_Nek 3 258 - -
Apr4g0806 607 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Apr4g0806 607 MobiDBLite consensus disorder prediction 363 381 - -
Apr4g0806 607 MobiDBLite consensus disorder prediction 514 540 - -
Apr4g0806 607 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0806 607 MobiDBLite consensus disorder prediction 520 536 - -
Apr4g0806 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Apr4g0806 607 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Apr4g0806 607 MobiDBLite consensus disorder prediction 350 440 - -
Apr4g0806 607 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0806 607 SUPERFAMILY Protein kinase-like (PK-like) 1 296 IPR011009 -
Apr4g0806 607 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0806 607 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 594 - -
Apr4g0806 607 PANTHER SERINE/THREONINE-KINASE NEK4 1 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0806 Apr-Chr4 6538265 6543775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0806 10 289 MAP Kinase Kinase Kinase AT1G53570 31.000 9.72e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Apr4g0806 Pkinase 4.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0806 K08857 - gmx:100796019 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0806 4 6538265 6543775 Apr4g0806 4 6538265 6543775 ECH
Apr4g0806 4 6538265 6543775 Apr8g1514 8 24469444 24475877 PCT