Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0744 ATGTGTTTGCCTGAGGGAGAGAGAGCCATGGCACTAGAAGCAGTAGTGTATCCACAACCACAAGACCCATTTGGTTATGGAATCAAAGACCTCTACAACTACAACTTGTTAGAAGGTGGTGGTGGAAACTGGGACTATGGTGACTTCAACCTTGAAAAAGAAGAACAAGGTTGTGTCAGTTTTCTTGAGAACCAAACAGAAAATTACCCTTATGGAGATTGGAATTGTTCTCCTCCACCAATGTTGCCTCACATCAATGTGTCAAATTCAAATCCATCTTCAGAGACCAGCAACACACAGAACTTAGATAGCTCAACTTCCACACCTCCTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTTGAGCGCAACAGAAGGAAGCAAATGAATGAGTATCTCTCAGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGAGGGGCTATTAACTTTGTTAAGGAGCTTGAGCATAGGCTGCAATTTCTAGGTGCTCAGAAAGAAAAAGAGATTAAATCTGATAAGCCCTTTTCTGAGTTCTTCACCTTTCCACAGTATTCAACATGTGGTAGTGGTGGCTGTGATAATTCTGCGGCCACTGGTGAGCAACTGGGTGGTGAGGTTCAGTCTGGCATTGCTGATATAGAAGTGACGATGGTAGAGAGTCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATGGTCACTAGTTTGCATGGCATGCGTCTTACCATCTTGCACTTAAATGTTACTACCACTGGGGATATTGTTCTCTATTCTCTCAGTGTTAAGGTAGAAGATGATTGCAAGCTAGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGCTGGATAGGATTCAACAAGAGTCAATGTTGAATTAA 975 0.4277 MCLPEGERAMALEAVVYPQPQDPFGYGIKDLYNYNLLEGGGGNWDYGDFNLEKEEQGCVSFLENQTENYPYGDWNCSPPPMLPHINVSNSNPSSETSNTQNLDSSTSTPPRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEHRLQFLGAQKEKEIKSDKPFSEFFTFPQYSTCGSGGCDNSAATGEQLGGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKMVTSLHGMRLTILHLNVTTTGDIVLYSLSVKVEDDCKLGSVDEIAAAVYQMLDRIQQESMLN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0744 324 MobiDBLite consensus disorder prediction 82 108 - -
Apr4g0744 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 179 IPR011598 GO:0046983
Apr4g0744 324 PANTHER MAX DIMERIZATION, MAD 10 324 - -
Apr4g0744 324 MobiDBLite consensus disorder prediction 82 126 - -
Apr4g0744 324 SMART finulus 134 185 IPR011598 GO:0046983
Apr4g0744 324 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 324 - -
Apr4g0744 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 192 IPR036638 GO:0046983
Apr4g0744 324 Pfam Helix-loop-helix DNA-binding domain 129 180 IPR011598 GO:0046983
Apr4g0744 324 Gene3D - 118 200 IPR036638 GO:0046983
Apr4g0744 324 CDD bHLH_AtFAMA_like 131 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0744 Apr-Chr4 6065215 6066644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0744 10 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.771 6.50e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0744 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0744 - - gmx:100777413 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0744 4 6065215 6066644 Apr4g0744 4 6065215 6066644 ECH
Apr4g0744 4 6065215 6066644 Apr8g1464 8 23482587 23483830 PCT