Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0743 ATGAAAAAACACACTCACGCAACGCTGTTCTTCCTCCTCATCTTACCTGGAATACCTATCGCCGCAGCCCAAGCCCAAGCCCAGCCCAATGACTTCTCCGACACAAACCTCAACCAGTTCAACCCATCCATAGCCATAATCATCGTCATACTAGTCGCCGCTCTTTTCCTCATGGGCTTCTTCTCCATCTACATACGCCATTGCGCCGACTCCCCCTCCAACGGGGTTGGGCCCATCACCGCCGCACGCTCCAGGAGGGCCGCGCGTGGGCTTGACCCAGCGGTCATCGAAACATTCCCAATCCTCGAGTACTCAGAGGTCGAGGTTCACAAGACTGGAAAAGAAGCGTTGGAATGCGCGGTTTGCTTGTGCGAGTTCGAGGAAACCGAAACGCTGCGTTTAATTCCCAAGTGCGACCACGTTTTCCACCCGACTTGCATCGACGAGTGGTTAGGGTCCCACACCACGTGCCCCGTTTGCCGAGCTAACCTCGTTCCTGGCGACTCCGTTCCCGTTCCCGTCCCCGATCCCGAAACGCGAGACGTTGAGGCCCAAAACGACGCTATTGAAACCGTTGCGGAGCAGCAAAACGCTGACTCTGACCGGGTCTTACCCGAGCCTGAAGTGGTTCCCGTGGAGAAAACGCTAAACAGAAACCGGACGCGAGGTTCTCGGTCGAACCGGCCACGCCGGTTTCCGAGGTCGCACTCGACCGGTCACTCGTTGGTCCAACCGGGCGAGAACACTGACCGGTTCACTCTGAGATTGCCGTTGGAAGTGAGAAAGCAAATAATAAACCGGCAATTGCAACGGGCGAGTAGTTTGATTGTGTTGCCTAGAGAAAGTAGTTCGCGGCATGGTTACCGAACCGGAGGAGAGGGAAGTAGTAGAGGGAAGAATTCGAGGCGGTTCGACCGGAGCGCTAAATCGGACCGGTGGATTTTCACGGTGGCGGCGCCTTTCTTTGCGAGAGCATTGTCAATTAGGTCTCAGAGGGTGAATAACAACGATGGCGAAGGGACGTCCTCTAGCTCTACGGCGCCTATACTGCCGCCGTCGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1089 0.5638 MKKHTHATLFFLLILPGIPIAAAQAQAQPNDFSDTNLNQFNPSIAIIIVILVAALFLMGFFSIYIRHCADSPSNGVGPITAARSRRAARGLDPAVIETFPILEYSEVEVHKTGKEALECAVCLCEFEETETLRLIPKCDHVFHPTCIDEWLGSHTTCPVCRANLVPGDSVPVPVPDPETRDVEAQNDAIETVAEQQNADSDRVLPEPEVVPVEKTLNRNRTRGSRSNRPRRFPRSHSTGHSLVQPGENTDRFTLRLPLEVRKQIINRQLQRASSLIVLPRESSSRHGYRTGGEGSSRGKNSRRFDRSAKSDRWIFTVAAPFFARALSIRSQRVNNNDGEGTSSSSTAPILPPSAVDSARPPV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0743 362 SUPERFAMILY RING/U-box 105 167 - -
Apr4g0743 362 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Apr4g0743 362 CDD RING-H2_EL5_like 118 161 - -
Apr4g0743 362 PANTHER RING FINGER DOMAIN-CONTAINING 1 303 - -
Apr4g0743 362 MobiDBLite consensus disorder prediction 333 351 - -
Apr4g0743 362 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 303 - -
Apr4g0743 362 Pfam Ring finger domain 118 161 IPR001841 -
Apr4g0743 362 MobiDBLite consensus disorder prediction 221 235 - -
Apr4g0743 362 MobiDBLite consensus disorder prediction 333 362 - -
Apr4g0743 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 166 IPR013083 -
Apr4g0743 362 MobiDBLite consensus disorder prediction 194 248 - -
Apr4g0743 362 SMART ring_2 119 160 IPR001841 -
Apr4g0743 362 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0743 Apr-Chr4 6046992 6048603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0743 9 347 Rapid Response to Elicitors AT3G05200 44.909 1.07e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0743 K10664 - gmx:100781706 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0743 4 6046992 6048603 Apr4g0743 4 6046992 6048603 ECH
Apr4g0743 4 6046992 6048603 Apr8g1462 8 23431366 23433618 PCT