Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0738 ATGGATCATCAAGGGCATGGCCAGAACCCATCAATGGGAGTTGTTGGAAGTGGAGCTCAGTTAGCATATGGCTCTAATCCATATCAGCCAAGCCAAATAAGTGGAGCCCCAGGGTCAGTGGTGACGTCAGTTGGGACCATTCCATCTGCTGGTCAACCTGCTGGAGCTCAGCTGGGACAGCATCAACTTGCTTATCAGCATATTCATCAACAACAACAGCACCAGCTTCAGCAACAGCTTCAACAATTTTGGTCCAGTCAATATCAAGAAATTGAGAAGGTTACTGATTTCAAAAACCACAGTCTTCCTCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCATGTGAAATGTTCATTTTAGAGTTAACCCTGCGCTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAGAATGATATCGCTGCAGCAATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACCTGAAAGATGAGGTTCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCACTTCCTTACTGCTATATGCCACCTCAGCATGCGCCCCAAGTTGGAACTGCTGGTGTCATAATGGGCAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAGTCTCATCCTTACATGGCACCGCAAATGTGGCCACAGCCACCAGAGCAACGTCCATCATCTCCAGAACATTAG 783 0.4649 MDHQGHGQNPSMGVVGSGAQLAYGSNPYQPSQISGAPGSVVTSVGTIPSAGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSSQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPEQRPSSPEH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0738 260 SUPERFAMILY Histone-fold 74 173 IPR009072 GO:0046982
Apr4g0738 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Apr4g0738 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Apr4g0738 260 Pfam Core histone H2A/H2B/H3/H4 72 164 IPR007125 GO:0003677
Apr4g0738 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0738 Apr-Chr4 6014789 6017523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0738 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.500 2.22e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr4g0738 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0738 K08066 - gmx:100527803 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0738 4 6014789 6017523 Apr4g0738 4 6014789 6017523 ECH
Apr4g0738 4 6014789 6017523 Apr8g1456 8 23356322 23357142 PCT