Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0725 ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTGGTATTTCGTGGTTCACCGGAAAACGAAGAAACCTCGCTCGGAGTCGGAGGAAGCCTTGTCGATAAGATCAATTACTGTATCCGAAATTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCTCCTTCCATTCCTAAGGACGCTGCGCCTCCGATCCGATGGCGCAAGGGGGAGTTAATCGGTTGCGGTGCCTTTGGCCAAGTTTACGTTGGAATGAATCTCGATTCCGGAGAGCTTCTTGCAGTTAAACAGGTTCTGATTGCGGCAAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCATATAAAGGAGCTTGAGGAAGAAGTTAAATTACTTAAAGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACAGTCAGAGAAGAGGACACTTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCAATATCATCCCTGTTGGGGAAGTTTGGGGCTTTCCCTGAGGCCGTCATAAGGACTTACACGAAGCAGTTGCTGCTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTAGCAGATTTTGGGGCATCCAAACAAGTCGTTGAGCTGGCCACAATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCCGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACGGGAAAGCCTCCCTGGAGTCAGCAATATCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACGACCAAGTCTCATCCACCAATCCCTGAGCATCTATCCGTTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGATTTTGAGGCCATCAGCATCAGAACTGCTGCAGCATCCCTTTGTTACTGGGGAACATATGAATTCTCTTTCTCTGTCTTCTAATGTCACGGAAAATTTTGAAGCTTCTTCACCGTCATGTGTCCCACATGTTGAATCTTTCCTCGTTTGCTCGACAGTAAATCCTCAGGACTCGGGAAATAAACAGTTGTGGGGAATGAGTGATGATGATGACATGTGTGAGATTGATGACCAAGAGTTCTCGCAGAGTGATGTCAAGTTCAAATCATTGATGTCAAATAATATTGAGAGCTTCAACCCGATGTCTGACCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGAGTTAATTTTGGCACCGATGAAAATTACGTGCCACCAGATCAGTCGGGGGCTGATAACGTGCAGAAAGATTTTTCCTTTCAAGGTGTGCCATCTTTGTCAGAGGAAGATGATGAATTAACAGAGTCAAAAATTAAAGCCTTTTTAGACGAGAAGGCTCTGGAACTGAAAAAACTGCAAACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTGATTGATAGCTCAAGTGATGATAATGCGGCTCGAAAATACTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTCGGGCACCAATTAATACTCCATCTAAAGCCGTTGACAATGCTGGCAGTCCTGGAAGTAATGGCAGGTCTTCATCAACTGTTGGCCATGTAAATAACTATGTTTCGCAGGATATTCCAGCATCCCCCAATAATGAATGGAAAGGACTGATAGCTGACTCCCAGCAGGAGCCCAGTAGCCCAAGTTTAAACTTTTCTGAAAGACAGAAAAAGTGGAAAGAAGAGCTCGACCAGGAACTTGAGAGAAAACGAGAAATGATGCGCCAGATGGGAGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGACAGAGGGAGCGGACAAGATTTGCTTCTCCAGGCAAATAA 1959 0.4467 MQDIFGSVRRSLVFRGSPENEETSLGVGGSLVDKINYCIRNSRVFSKPSPPSPSIPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPEHLSVAAKDFLLKCLQKEPILRPSASELLQHPFVTGEHMNSLSLSSNVTENFEASSPSCVPHVESFLVCSTVNPQDSGNKQLWGMSDDDDMCEIDDQEFSQSDVKFKSLMSNNIESFNPMSDPSDDWGCKFDASPELENRGVNFGTDENYVPPDQSGADNVQKDFSFQGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIDSSSDDNAARKYLKLPPKSRSPSRAPINTPSKAVDNAGSPGSNGRSSSTVGHVNNYVSQDIPASPNNEWKGLIADSQQEPSSPSLNFSERQKKWKEELDQELERKREMMRQMGGKTSSPKDRALHRQRERTRFASPGK* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0725 652 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0725 652 SUPERFAMILY Protein kinase-like (PK-like) 64 350 IPR011009 -
Apr4g0725 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Apr4g0725 652 Coils Coil 605 629 - -
Apr4g0725 652 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0725 652 Gene3D Transferase(Phosphotransferase) domain 1 64 356 - -
Apr4g0725 652 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1 1 615 - -
Apr4g0725 652 MobiDBLite consensus disorder prediction 536 602 - -
Apr4g0725 652 CDD STKc_MAPKKK 64 328 - -
Apr4g0725 652 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0725 652 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 615 - -
Apr4g0725 652 MobiDBLite consensus disorder prediction 633 652 - -
Apr4g0725 652 Coils Coil 98 125 - -
Apr4g0725 652 MobiDBLite consensus disorder prediction 528 652 - -
Apr4g0725 652 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Apr4g0725 652 MobiDBLite consensus disorder prediction 603 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0725 Apr-Chr4 5948403 5954114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0725 1 652 MAP Kinase Kinase Kinase AT1G54960 58.140 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr4g0725 Pkinase 6.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0725 K20606 - gmx:100807537 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0725 4 5948403 5954114 Apr4g0725 4 5948403 5954114 ECH