Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0721 ATGATCATTTTTAGGCCGAAATGGGCCTGCCCGATTCCAAATAAAAAGCTAAGCGTGAGGGAGAAGCCTTTGAAGTTGAAAACTTGTCCCAACTACCTAGCGCCAAAAAGTTTCCTCCACTTTCAATTACTCTCAAGTCTCACCCCTCATTCACCGAACGCTTTCTGCAAAAAGCGAGGGAAAAACAAAATGACAGATTCACGGTCGAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATCGACTATCACATGGCACCGCCAATCCCAGGCACCGATATCTGTTACAGTAGCTTCCATGGTGAAAAGGTGAACGAGGTGCCTGTAATAAGAGTATATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATTCATAGAGCTTTACCTTATTTGTATGTCCCTTGTTCAGACATACCACTTCTGCCTGACCAAGGTGATGCTTACACCTATAACGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCAACGAGACAGCATGTCCATGGATGCAGCCTTGTACGAGCAAAGAAATTTTATGGCTATCATTCATTTGAGGATTTATTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATACCCTTTATTCTTCAGTTTCTGGTTGATTATAACTTATATGGCATGGGCCATTTGCACCTATCAAATTTGAAGTTCCGCCATCCCATACCCACTTGCAAGAAGTTAAATATTGATAGCCAGCATAGAAAGGCAGATCCAGGTGCAGATGCATGTTTAGAATCAAAATTGTGGATGTCTTCTGTGATACCATCTGATTGGATGTGGCCACCTCCAAGTGATTTTGGTGCTTCGTCAAATGATAATGCTCACTGTCCTAAACGCCAAAGCATATGTGAGCTTGAAGGAGATACTTCTGTAAATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACGTGCTCTGATGTCTACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAGAAACGGACTGGGATTCACAAGGCTACTATGCCTTCTGATCCTGGTAAACCACTTCCAGAAGATGTTATGAAACTGCTATCTGTTGGTTTTGACTTTGAGAGAAAACTTATTCACATGTGCAGTGAAGCTGAAACCTCTTTTTTTTGTACTCCTGAGAAGGAACTGAGAGAAACAGACATAATAGGCTCGGCATCACCACCAGCTTCATTATGTGAAAATGCCAAATTTCATGAGGAAGGAACTGACCTAAATCCCAAATTGTTGACTTTGGGTGAAATGCAATCATCTGAAATTATTGGAATGTTGGACATAAAGGCTGCGGATAAGGAAGCACAAAATCTCCTTAAGTGGCTTGCAACATCTCAAGCTGCAGAGGATATAAACTCAGATGATGAACTTGCTTATGAAATGATCTTGACTCCCTTGGTACCTTCTGCAACAATTCATAAGGTGCTGGAGGAAGCTAATATGGCTTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTAGCAAAGGAGAAGCCTTCTAGTTCCTTTGATCACAATTCTCCTATCAAAGCTTCATCAAACAGTATGTTACCCCAAGTTGACGGTTCAAATGATGATGAATTTTCAAGTCCACATGCTAGTTTGGCTGGAACCTCTTCTAGTCTGACTGGAACCTCTTCTCCATTAGAGATAAGCAGTGAATACAAAAGGGGTTCTGAGTATCATGTACTGCACAATACTGACACAAGTACTCTTAGTAAAGATAAAAGGAATAAACAATGGGGCTCTTTGCCATTTTCCATGACTGATAAGGTTAATAAAGATGGAGAACATGTCACTTTACTTGCAACTCATCCATTTGGAAGTGCAACTGGAGATTCTGCTCATTCAGATTACTTAAACAGAAATGAGGTGAGAAATAGTGCTTATATTAAAAGAAATATGGACAAAGGTGCTTCAGATTCAAAAGAAGTATATAGATTGGTAAACTGCTCTTTGCGAGATATGATGAGGCGAAAGCGATCTTATCAAGTTGAACAAACTGAATGCGAGGCTGAAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGAACCAAATAGATGCCTTCAGCAAAAACAACTGGATTTGAAAACAAAGCAAACTGATGAAGAAGAAACAGAACTCCAGAAGAACTGTGATCTAATTGTTAGTGATCATGATAATTTGATGTGTAACAAACTGCCTCTTCCAGCTGGCAGCGGCAGTTTTTTACAAGCTAGTAAGCCAAAAGATGAGTGTTTTGGTCAACATGAAATGCAGGGTTTAGAAGCAAGCATGGTGTTGAGGAACTGTACTAATGAAGGTTCTTCCTTAATGCATGGAGGACCAGACCTCCATGAGCCTGAAAAATATTTTATTGATTCCACAGATCAATCTGTGACTTGCAGGGGTGAAGATCTTAGGGTTTGTGCAGCTTTTACAAAGCCTGCGTCCCCTCATCCCTTTTTAGACACTCAGTTGATAACAGGTGCTGATTATAAAGTCAGAGTTCCTGAGAGGAGTCACCAAACTGAATCTTCTACTTCATGTAGTGTGCAGAGCTCATTCATCAATGATAAAGTGTCTGGCAAATATAATTGCATGGATCAAAGTTCTTATGGGAGCATATCTTTTGTGCGAGATGATCAGGTGAAGTTTTGTGAGAATTCTGTGGGCAAAAGTGCTGCAAGTGACGTGCAAGTATTGTTAAGCAAAAAAATGGATAATCCAAAGTTGGGAGAAAAGTTGTTATGCGAGACTGTTGGCTCTGAACCCACTGACCTGAAGGGTAATCCCATGAAATTCTTTGAAATAACCACAGGGGATGACCGCTTGGCTGATAAGAATCTTGAAAGTAATTTGTCCTTGCCAATTAAAACCCTTACATCTAAAGGGACAAAGGGTGTCACCACTCACTATCAAAATGATGGCTCTTACTTATATCTATTAACACCAAATATTTTGCCTCCTTCTGCGGTTACTGTGCATAGATGGCTATTTTGTGAAGAAAAAGGGCATGTTCCTGATCAAATGCATCAAGAAACTGATGCTGAGGACAAGGATATACCTAAATGTGCTTCTGAACCTCCTCTTAGGCAAAAGCTGTATCAAGATGCTGATACAGAAAAGAAGCTTCCATGCATTGGTGAAGAACAAACAGAAAGAGCGAAAGCATGGCTAGATGGCTCACAAGATATTTCTCAGATATCAGGCCCTGATGGAAAATCAGGTCTTACCCCTCTAAGTCAAATTGGGTTTCGTGACCCTGCTAGTGTTGGCTGTGGACAGCAACTAACATTACTTAGTACAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTGTTGAAGTTCTTGTTCTTTTGCATAGTAAATCTGTACCCTCTCAGAGAAGTTTTGATGGTCTATCTGGCTGCAAAATGTTGGTCTTCACTGATGAGAAGCACATGTTGAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCGGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTGGCAGAAAGGGCATCACATCTTGGTTTAGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTGGATTGCTTCTAAAGATACCAAAGCATCTGAAAAAGATACCTTGGGACTGGACATCCATGATTCCCCTACTCTAGATTGTTATATGCAAGAAAATTCAATAATTGAGGATGAGTGGGGACGAACACATGCTAGCGGAGTTCATGTAGGAGGCAGAATTGTCCTTAACATGTGGCGATTGATCCGTGGAGAAGTTAAGCTGAACTTATATACAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCTTCATTTCACCACAAGGTGCTGGCAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCAGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAAATATTAAACCAACTTGATATGGTGAATCGAACAGCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTCTCTGTTCTCTCTCGAGGCTCCCAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATTCACAAAATTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCCTCTCAGCCTGCCATGGAGTGCCTGCCCCTAGTAATGGAACCAGAGTCTGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTTCAGTCTTTATATCCATCCATGATAATTGCATACAATCTATGCTTTTGCACATGTCTTGGTAAAGTTGTGCCACCAAAGGCCAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAACACGTTCTGCAGGGTTTAAAAGATCAAATATTGCTCACTCCAAATGGTGTTATGTTTGTGCCTTCCAAGGTTCGAAGAGGTGTACTGCCCCGATTATTGGAGGAAATCTTAACAACTCGAATAATGGTAAAACAAGCAATAAAAAAGTTGGCTCCTTCAGAGCAAATTCTTCAGCGGATATATAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAATGCTATATCATTTGTAAATCTACAGGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGACAGTATGTTTGTCCTGCTTAAAGGACGCACCATCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTCCTTACTAAAAAACGATATGTTGGCTACAGTTATGAACGCCCTGATCAAATTGAACCTGGTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGATTATGGAGCAGTCTTTGAGACTCTATTTTGAGCATCAAGATTTATTGGAGGTGAAGGCTTATTTGCAACGTCAGTGGAAGAGAATTCTTTCTGGCAGATTTTCCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATTTCGTCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATCAGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTGTATTACATTAATAAACAAATAATACCCGCTTTACAGCGGGTATTTGGGCTTATTGGTGCTGACCTGAACCAGTGGTTTTCAGATATGCCCCGCTCCATAAGAGAAGCTTCTACAAAGCATACATTCAATCCAAATATTCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCCCATTTATGCAATCAATGTTCTGAAAATGAAGTAGCTTCTGCGGCAGCAGTTATTGGCAAGACTTCAAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGAGGCGGGGATAGGCTTCTCGAAAATGCTGTGAAGTGCACGTCCATTTCATGCTTGGTGTTCTATGAGAGGCGAAAAGTTCAGAAAGAACTGCTAGCTGCCACCCATATTGCCGCAGAATTGTATATCTCCTCCTTGCCTTAA 6000 0.4097 MIIFRPKWACPIPNKKLSVREKPLKLKTCPNYLAPKSFLHFQLLSSLTPHSPNAFCKKRGKNKMTDSRSNSEIFSVRIVSIDYHMAPPIPGTDICYSSFHGEKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCSDIPLLPDQGDAYTYNVAASLEKALKLKGSAGSTRQHVHGCSLVRAKKFYGYHSFEDLFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSNLKFRHPIPTCKKLNIDSQHRKADPGADACLESKLWMSSVIPSDWMWPPPSDFGASSNDNAHCPKRQSICELEGDTSVNEILNQQFKMYSSLSQTCSDVYMVQSLVPIWEEQQKRTGIHKATMPSDPGKPLPEDVMKLLSVGFDFERKLIHMCSEAETSFFCTPEKELRETDIIGSASPPASLCENAKFHEEGTDLNPKLLTLGEMQSSEIIGMLDIKAADKEAQNLLKWLATSQAAEDINSDDELAYEMILTPLVPSATIHKVLEEANMAYESESQKECQDILDSIDDMLELELAKEKPSSSFDHNSPIKASSNSMLPQVDGSNDDEFSSPHASLAGTSSSLTGTSSPLEISSEYKRGSEYHVLHNTDTSTLSKDKRNKQWGSLPFSMTDKVNKDGEHVTLLATHPFGSATGDSAHSDYLNRNEVRNSAYIKRNMDKGASDSKEVYRLVNCSLRDMMRRKRSYQVEQTECEAETTKKLLLDRHEEPNRCLQQKQLDLKTKQTDEEETELQKNCDLIVSDHDNLMCNKLPLPAGSGSFLQASKPKDECFGQHEMQGLEASMVLRNCTNEGSSLMHGGPDLHEPEKYFIDSTDQSVTCRGEDLRVCAAFTKPASPHPFLDTQLITGADYKVRVPERSHQTESSTSCSVQSSFINDKVSGKYNCMDQSSYGSISFVRDDQVKFCENSVGKSAASDVQVLLSKKMDNPKLGEKLLCETVGSEPTDLKGNPMKFFEITTGDDRLADKNLESNLSLPIKTLTSKGTKGVTTHYQNDGSYLYLLTPNILPPSAVTVHRWLFCEEKGHVPDQMHQETDAEDKDIPKCASEPPLRQKLYQDADTEKKLPCIGEEQTERAKAWLDGSQDISQISGPDGKSGLTPLSQIGFRDPASVGCGQQLTLLSTEILAESRGDLLPDPQFDGINIVALGFQNDSDSIVEVLVLLHSKSVPSQRSFDGLSGCKMLVFTDEKHMLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESWIASKDTKASEKDTLGLDIHDSPTLDCYMQENSIIEDEWGRTHASGVHVGGRIVLNMWRLIRGEVKLNLYTVEAVAEAVLRRKIPSFHHKVLAKWFSSGPGRARYQCIKYVIERAKLNLEILNQLDMVNRTAELARVFGIDFFSVLSRGSQYRVESMFLRLAHSQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVPPKANTLGVSSFSPEQHVLQGLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILTTRIMVKQAIKKLAPSEQILQRIYNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLENAISFVNLQEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYERPDQIEPGFDAKGIETVRRDTCGAVAKIMEQSLRLYFEHQDLLEVKAYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPSEVLAIDSPFRINDLYYINKQIIPALQRVFGLIGADLNQWFSDMPRSIREASTKHTFNPNIHRTRIDYYYLSKHCVLCGGLVQASAHLCNQCSENEVASAAAVIGKTSKLEQEMQHLVAICHHCGGGDRLLENAVKCTSISCLVFYERRKVQKELLAATHIAAELYISSLP* 2000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0721 1999 CDD DNA_polB_zeta_exo 1142 1392 - -
Apr4g0721 1999 Gene3D - 1712 1878 IPR042087 -
Apr4g0721 1999 CDD POLBc_zeta 1418 1866 - -
Apr4g0721 1999 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 70 1992 IPR030559 GO:0006281|GO:0016035|GO:0019985
Apr4g0721 1999 MobiDBLite consensus disorder prediction 550 602 - -
Apr4g0721 1999 Gene3D - 1175 1453 IPR036397 GO:0003676
Apr4g0721 1999 SUPERFAMILY Ribonuclease H-like 91 1416 IPR012337 -
Apr4g0721 1999 Gene3D DNA Polymerase, chain B, domain 1 93 257 - -
Apr4g0721 1999 Pfam DNA polymerase family B 1411 1859 IPR006134 GO:0000166|GO:0003677
Apr4g0721 1999 ProSitePatterns DNA polymerase family B signature. 1637 1645 IPR017964 GO:0000166|GO:0003676
Apr4g0721 1999 Pfam C4-type zinc-finger of DNA polymerase delta 1903 1976 IPR025687 -
Apr4g0721 1999 Gene3D Helix hairpin bin 1536 1596 - -
Apr4g0721 1999 PRINTS DNA-directed DNA-polymerase family B signature 1470 1483 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr4g0721 1999 PRINTS DNA-directed DNA-polymerase family B signature 1579 1591 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr4g0721 1999 PRINTS DNA-directed DNA-polymerase family B signature 1635 1643 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr4g0721 1999 SMART polmehr3 1143 1649 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr4g0721 1999 Gene3D Palm domain of DNA polymerase 1456 1701 IPR023211 -
Apr4g0721 1999 SUPERFAMILY DNA/RNA polymerases 1457 1871 IPR043502 -
Apr4g0721 1999 MobiDBLite consensus disorder prediction 554 602 - -
Apr4g0721 1999 Pfam DNA polymerase family B, exonuclease domain 118 257 IPR006133 -
Apr4g0721 1999 Pfam DNA polymerase family B, exonuclease domain 1151 1297 IPR006133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0721 Apr-Chr4 5905548 5921254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0721 106 257 Core DNA Replication Machinery Family AT5G63960 27.389 2.61e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0721 K02350 - gmx:100777934 3116.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0721 4 5905548 5921254 Apr4g0721 4 5905548 5921254 ECH