Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0718 ATGTTTGCTTCTGTATCAGATACGGGAAGTGAGGGGAGTGGAGTTTCAGGGCCCATTTTGATTCCGAAGCGTTTTGTTTGGCCTTATGGGGGAAGAAGGGTGTTTCTAAGTGGTTCTTTCACGAGATGGTCAGAACATATACCTATGTCTCCGATGGAGGGATGCCCTGCAGTGTTTCAAGTTATTTGCAGCTTAATGCCGGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAACAGCAGCCATTTGTAAGCGGGAACTACGGAGTAGTGAATACTATTTATTTATCGAGAGAGCCAGATATTTTACCTGCAATCTTAAGTACTGAAATGCCTGGTAGATCCCACATGGAGGTTGATAATGATGTCTACAGGCATATGGATGCTAATCCAAGGATGTCAGTGTCTGATCTGGAGGCTTCTCGCCATCGTATATCTGTATTCCTAACCTCACATACTGCATATGATTTGCTTCCTGAATCGGGGAAGGTCATTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTTCATGTTCTTTATGAACAGGGCATGTCTATGGCTCCTCTATGGGATTTTTGCAGGAGTCAGTTTGTTGGAGTTCTTAGTGCAATGGACTTCATCCTAATACTGAAAGAGCTGGGGAATCATGGTTCAAATTTGACTCAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCGATGCAGAACACTTGATAATAATGGTGGATCATATCCCTGGCGATTTGTTCATGCTGGGCCCCACGAATGTCTAAAAGGAGTGGCTTTGAAGGTCTTGCAAAACAAGGTTTCAACCGTCCCTATCATCCATTCTTCTTCAGAGGATGGTTCATTTCCTCAACTGCTACATCTTGCTTCCCTATCAGGAATACTAAAATGTATATGCAGGCAGTTTAAGCACTCCTCTAGTTCTTTGCCCATTCTGCAACTCCCGGTTGGTTCAATACCTTTGGGTACATGGGTGCCTAAAGTTGGGGAACCAAACGGGCAGCCACTTGCAATGCTGAGGCCAAATGCTTCTCTCAGTGCTGCTCTATTGATGTTTGTTCAAGCTGAGGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATATATTCAAGAAGCGATATTACTGCATTGGCAAAAGATAAAGCTTATGCACGGATATCTCTCGATGAAATTAGTATTCATCAGGCATTGCTTTTAGGACAAGATGCAAATTCTCCTCATGGGCTTTACAACGGCCACAGATGTCATATGTGTTTGAGGTCTGACTCGTTGCACAAAGTGATTGAGCGGTTGGCGAATCCTGGGGTTAGGAGACTTGTGGTTGTGGAGGCTGGCAGCAAGCGCGTGGAAGGGATTATTTCCTTAACTGACGTGTTCAGATTCTTGTTAGGGTAG 1452 0.4353 MFASVSDTGSEGSGVSGPILIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPAVFQVICSLMPGYHQYKFNVDGEWRHDEQQPFVSGNYGVVNTIYLSREPDILPAILSTEMPGRSHMEVDNDVYRHMDANPRMSVSDLEASRHRISVFLTSHTAYDLLPESGKVIALDINLPVKQAFHVLYEQGMSMAPLWDFCRSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKLQRCRTLDNNGGSYPWRFVHAGPHECLKGVALKVLQNKVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRQFKHSSSSLPILQLPVGSIPLGTWVPKVGEPNGQPLAMLRPNASLSAALLMFVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDANSPHGLYNGHRCHMCLRSDSLHKVIERLANPGVRRLVVVEAGSKRVEGIISLTDVFRFLLG* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0718 483 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Apr4g0718 483 Gene3D Immunoglobulins 19 101 IPR013783 -
Apr4g0718 483 Gene3D - 140 323 IPR046342 -
Apr4g0718 483 SUPERFAMILY CBS-domain pair 349 482 IPR046342 -
Apr4g0718 483 Gene3D - 330 483 IPR046342 -
Apr4g0718 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 483 - -
Apr4g0718 483 SMART cbs_1 350 398 IPR000644 -
Apr4g0718 483 SMART cbs_1 168 217 IPR000644 -
Apr4g0718 483 SMART cbs_1 433 482 IPR000644 -
Apr4g0718 483 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
Apr4g0718 483 SUPERFAMILY E set domains 21 99 IPR014756 -
Apr4g0718 483 CDD E_set_AMPKbeta_like_N 24 99 - -
Apr4g0718 483 Pfam CBS domain 350 394 IPR000644 -
Apr4g0718 483 Pfam CBS domain 434 482 IPR000644 -
Apr4g0718 483 ProSiteProfiles CBS domain profile. 346 404 IPR000644 -
Apr4g0718 483 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0718 Apr-Chr4 5886955 5896175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0718 30 92 Protein tyrosine phosphatase (PTP) family AT3G52180 35.938 7.63e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0718 - - gmx:100814655 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0718 4 5886955 5896175 Apr4g0718 4 5886955 5896175 ECH
Apr4g0718 4 5886955 5896175 Apr8g1435 8 23019997 23030180 PCT