Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0717 ATGGAAGAAGACGATGATTACGTTGAGTACGTTCCTGTGGCGAAGCGTCGAGCTATGGAGGCTCAGAAGATTCTCCAACGCAAAGGGAAGGAGATGATTGAGAATTTGTCTGACAGAAAAACCCTAATGTCCGTTCGTGAATTAGCCAAGGGTATCACGTACACTGAACCCTTGCTCACTGGTTGGAAACCGCCTTTGCACGTGCGAAGGATGTCGAAGAAGGAATGCGATTTGATTCGGAAGCAGTGGCATATAATTGTTGATGGTGACGATATTCCTCCCCCAATTAAGAATTTTAAGGATATGAGGTTTCCTGAACCTGTTTTGAAGAAATTGAAAGCTAAGGGGATTGTGCAACCAACGCCCATTCAGGTTCAAGGGCTTCCTGTTATATTATCAGGGAGGGATATGATTGGAATTGCATTCACTGGGTCTGGAAAAACCCTGGTTTTTGTGTTGCCAATGATCATGGTGGCAATGCAAGAGGAGATCATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTGATTGTTTGTCCATCGAGGGAACTCGCGAGGCAGACTTATGAAGTGGTGGAGCAGTTCTTGATACCTTTGAGGGAAGCTGGATATCCAGAGCTTAGGCCTTTGCTTTGTATTGGTGGAGTTGATATGAGGTCACAGCTCGAGATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCCGGGAGGTTGAAGGATATGCTGGCCAAGAAGAAGATGAATCTTGATAACTGTAGGTATTTGACGTTGGACGAGGCCGATCGTTTGGTGGATTTGGGATTTGAAGATGACATAAGGGAAGTTTTTGATCACTTCAAGGCTCAAAGGCAGACTCTCTTGTTTTCTGCCACTATGCCTACCAAAATTCAGAACTTTGCTAGGAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGTCGTGCGGGTGCTGCCAATCTTGATGTGATTCAGGAGGTTGAGTATGTTAAGCAAGAGGCGAAGATAGTTTATCTTCTTGAGTGCCTGCAAAAAACCCCACCTCCCGTTCTGATATTCTGTGAGAACAAGGCTGATGTCGATGACATCCATGAATACCTTCTATTGAAAGGAGTCGAAGCAGTGGCCATTCACGGAGGCAAGGATCAGGAAGAGAGGGAGTACGCAATTGCGGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCTACAGATGTTGCATCCAAAGGTTTGGATTTTCCCGATATTCAGCATGTAATTAACTACGACATGCCTGCGGAAATTGAAAATTATGTCCATAGGATTGGACGGACTGGAAGATGTGGCAAGACAGGTATAGCCACAACATTTATTAACAAGAATCAAAGTGAGACAACTCTACTTGATTTGAAACACCTCTTGCAAGAAGCGAAACAAAGAATTCCCCCAGTTTTGGCCGAGCTGAACGATCCAATGGAAGATAATGATGAAATCACAGATATAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGCCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGAGCATCAGAAGAGTATGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1629 0.442 MEEDDDYVEYVPVAKRRAMEAQKILQRKGKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHVRRMSKKECDLIRKQWHIIVDGDDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVVEQFLIPLREAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0717 542 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 32 - -
Apr4g0717 542 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 522 - -
Apr4g0717 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Apr4g0717 542 CDD SF2_C_DEAD 324 452 - -
Apr4g0717 542 Pfam DEAD/DEAH box helicase 121 300 IPR011545 GO:0003676|GO:0005524
Apr4g0717 542 Gene3D - 65 316 IPR027417 -
Apr4g0717 542 Coils Coil 454 474 - -
Apr4g0717 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 483 IPR001650 -
Apr4g0717 542 Gene3D - 322 484 IPR027417 -
Apr4g0717 542 CDD DEADc_DDX41 108 313 IPR044113 GO:0000398|GO:0003724|GO:0005524
Apr4g0717 542 SMART helicmild6 362 443 IPR001650 -
Apr4g0717 542 ProSiteProfiles Zinc finger CCHC-type profile. 501 516 IPR001878 GO:0003676|GO:0008270
Apr4g0717 542 PANTHER BNAA06G38640D PROTEIN 8 32 - -
Apr4g0717 542 PANTHER BNAA06G38640D PROTEIN 39 522 - -
Apr4g0717 542 Pfam Helicase conserved C-terminal domain 336 443 IPR001650 -
Apr4g0717 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 458 IPR027417 -
Apr4g0717 542 Pfam Zinc knuckle 500 516 IPR001878 GO:0003676|GO:0008270
Apr4g0717 542 SUPERFAMILY Retrovirus zinc finger-like domains 500 521 IPR036875 GO:0003676|GO:0008270
Apr4g0717 542 SMART ultradead3 116 327 IPR014001 -
Apr4g0717 542 SMART c2hcfinal6 500 516 IPR001878 GO:0003676|GO:0008270
Apr4g0717 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 312 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0717 Apr-Chr4 5878873 5882596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0717 66 478 Eukaryotic Initiation Factors Gene Family AT3G13920 29.496 5.41e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0717 K13116 - gmx:100819984 1043.49