Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0688 ATGGGAGGGAGTGCACAGAATAAGAGAATCGCCATCATTGGCGTCTCTACCTTCTTGCTGGTAGCTATGGTGGTTGCGGTGACTGTTAGTGTAAACTACAATAAAGGTGGATCCGACGATGATCCAAAAGGGGGGGACAAATCCCACGTAGCATCCTCGGTAAAAGCTGTGAAAACCCTTTGTGCACCCACAGAATACAAGAAGGAATGCGAGGATAGTCTGAGCCAAAACGCTGGCAACACCACCGACCCAAGAGAGCTCATAAAAATTGCGTTCAACGTAACCATCAACAGAATCGGTGAGGGATTGGAGAAAACCCATCTCATGCAAGAGGTAGAGAATGACCCTATGACCAAGGAGGCACTCGACACGTGCAAGCAACTCATGAATCTCTCCATCGCCGAGTTCACAAGGTCCATCGATAAATTCTCAAGGTTTGACCTCAACAACATCGACAACATCCTCACCAGTTTGAAGGTTTGGCTAAGCGGTGCAATCACGTACCAAGAAACATGCTTAGATGCGTTCCAGAACACCACAACCGAAGCTGGTCAAAAGATGCAGGATGCCTTGCAAACCGCCATGCACATGAGTAGCAATGGCCTTGCTATCATCACCGAGCTGTCAAAAACTCTCGACGAAATGCATGTTTCCAAACCTGGTCGTCGCCTCTTGGAGGATGTTGCGGATTTGCCTGTTCTTGGACACGACGACTTTGAGCTTCCCGAGTGGGTTGATGAACGTGTTGGTTTCCGTAAACTCCTACGTATAACGGGACGAAAACTCATGGCACATATAGTTGTTGCCAAGGATGGTTCTGGAAATTTCACGAGCATTGGCGAGGCTTTGAAACACGTGCCCACGAAAAACCTTAAGCCTTTTGTTATTTACATCAAGGAGGGCGTTTACAACGAGTACGTCGAAGTCGAAAGAAGCATGACCCATGTCGTTATGATTGGTGATGGTGGTAAGAAGACAAGGATCACTGGCAACAAAAACTTCATCGATGGAGTTGGTACCTACAGAACCGCCACTGTTGCTGTTCTTGGAGATTACTTCGTTGCCATTGGTATTGGATTTGAGAACTCAGCTGGAGCTGAAAAGCATCAAGCAGTAGCTTTAAGGGTTCAAGCTGACAAATCCATTTTCTACAAATGCCGAATGGATGGTTTCCAAGACACCCTTTACGCCCACGCCATGCGTCAATTCTACCGCGATTGCATAATTTCAGGAACCATCGACTTTGTCTTTGGTGATGCAGTGGCTGTTCTCCAAAATTGCACTTTTGTGGTCCGAAAACCATTAGAAAACCAACAATGCATTGTGACAGCACAGGGTAGGAAAGAGAAGAACCAACCATCAGGTATAATCATCCAAGGTGGATCCATTGTGTCAGACCCAAAATACTACCCAGTTAGGTTCGACAACAAAGCCTACTTGGCTCGTCCATGGAAGAATTTCTCAAGAACCATTTTCATGGATACCTACATTGGTGATTTGATCACACCCGATGGTTACATGCCATGGCAAACACTAGAAGGTTTAAGCGGAATGGACACTTGTTTCTATGCTGAGGTCAACAACCGTGGCCCCGGTTCAGACAAAAGCAAGCGCGTACAATGGGAAGGAATCAAGACCCTCACATCAGATGACGCCAAGAAATTCTTACCATCAATATTCTTCCGTGGAGATGATTGGATTAAGGTTACTAGGGTTCCTTACTACCCTGGTGTGGCCTCTCCTACTCATAGAAATTGA 1758 0.463 MGGSAQNKRIAIIGVSTFLLVAMVVAVTVSVNYNKGGSDDDPKGGDKSHVASSVKAVKTLCAPTEYKKECEDSLSQNAGNTTDPRELIKIAFNVTINRIGEGLEKTHLMQEVENDPMTKEALDTCKQLMNLSIAEFTRSIDKFSRFDLNNIDNILTSLKVWLSGAITYQETCLDAFQNTTTEAGQKMQDALQTAMHMSSNGLAIITELSKTLDEMHVSKPGRRLLEDVADLPVLGHDDFELPEWVDERVGFRKLLRITGRKLMAHIVVAKDGSGNFTSIGEALKHVPTKNLKPFVIYIKEGVYNEYVEVERSMTHVVMIGDGGKKTRITGNKNFIDGVGTYRTATVAVLGDYFVAIGIGFENSAGAEKHQAVALRVQADKSIFYKCRMDGFQDTLYAHAMRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKEKNQPSGIIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGLSGMDTCFYAEVNNRGPGSDKSKRVQWEGIKTLTSDDAKKFLPSIFFRGDDWIKVTRVPYYPGVASPTHRN* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0688 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 208 IPR006501 GO:0004857
Apr4g0688 585 Gene3D - 259 578 IPR012334 -
Apr4g0688 585 Pfam Pectinesterase 265 564 IPR000070 GO:0030599|GO:0042545
Apr4g0688 585 SMART PMEI_2 52 204 IPR006501 GO:0004857
Apr4g0688 585 SUPERFAMILY Pectin lyase-like 264 577 IPR011050 -
Apr4g0688 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Apr4g0688 585 CDD PMEI-like_3 59 210 - -
Apr4g0688 585 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Apr4g0688 585 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Apr4g0688 585 PANTHER PECTINESTERASE 10 580 - -
Apr4g0688 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Apr4g0688 585 PANTHER PECTINESTERASE 10 580 - -
Apr4g0688 585 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0688 Apr-Chr4 5641558 5643740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0688 4 578 Carbohydrate Esterase AT3G05610 50.517 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0688 K01051 - gmx:100801686 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0688 4 5641558 5643740 Apr4g0688 4 5641558 5643740 ECH
Apr4g0688 4 5641558 5643740 Apr8g1373 8 21018966 21021037 PCT