Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0687 ATGGCTACTTCGGAGCTATCCATAAACTTATTCATGCTCTATTTTCTCAGCATTTTCTCCATCATTGCTTCTCTTGCATCCTCCTCTTCCTCCACCAATACCATTTGCAACCTTACACCTTATCCAACATTTTGCAAATCCAATTCACCACCTAAAGGCCAAGGCGACATACACCAATATGGCCGGTTCTTCGCAGCCAAATCCTTGTCATCATCAAAGAAGTTTCTCTCGTTAGTCTCCAAATACCTTAAATCTCCTTCAAAATTCTCAAATTCCACGATGCTTGCCCTTCAAGATTGTAACCTCTTAGGTGATCTGAATAAAGATTTTTTGTCTAAGACTCTAAAAAGCATCAATTCTACTAACAGCCTCAGCATCTCAGAGGCCGAAAATTTGCACACTTTCCTTAGTGCTACGTTAACCAACCTTGAAACATGCTTAAACAGCCTTCAAGAAACCACATCAAGCCCTGACCATGACATACTAACCCATCTTTCAAATGGAACCATGTTTTATAGTATATCTCTTGCGATCTTCAAGCGGGGTTGGAAAGCCAATGTAAACAAAGAGAGAAAACTAGTGGAAAGAAATAACCACATGGGGGAACAAAGATTGTACGAGGTTATTAGAATACAAGGAAGAAAGTTGCTTCAGTTCGGTGCTGACAATGTTGTTGTGAACCAAACTGTGGTGGTGAATCCAGATGGTTCTGGAAACTACACTACCATCAATGATGCAGTGGCTGCAGCCCCTAATAACACTGCGGGTTTCAATGGGTTTTTCGTGATTCGCGTGGTGGGTGGAGTTTATGAAGAGTGTGTTTCTATTCCCAAAAACAAGCAGTACCTGATGATGGTAGGAGATGGAATTAACCAAACCATAATCACGGGTAATCGCAGCGTGGCTGATGGTTGGACTACTTTCAATTCTGCCACATTTGCCGTTGTTGCTCAAAGTTTTGTGGCAATAAACATAACATTTCGCAACACAGCTGGAGCAATCAATCACCAAGCAGTGGCTCTTCGAAGCGGGGCAGACATGTCTGCATTTTATAATTGTAGCTTTGAAGGGTACCAAGACACCTTATACACCCATTCTCTGAGGCAATTTTATAGGAACTGTGACATTTATGGCACAGTGGACTTCATATTTGGTAACGCACAAGTTGTCTTTCAAGACTGTAATATCTATCCAAGACTCCCACTTGAAGGTCAATTCAATGCCATTACCGCACAGGGCAGAACTGATATCAACCAAAACACTGGCACTTCCATACACAATTGTACCATAACCGCAGCCAGTGATTTAGCCACTAGTAATGGCACAACAAAAACGTACCTAGGCAGGCCTTGGAAGCAATATTCTCGAACTATTTATATGCAATCTTTCATGGATAGTTTAATTGATCCTGCGGGTTGGGTAGCTTGGTCTGGGGACTTTGCTTTGGACACCCTTTATTATGCGGAATTTGATAATCAGGGACCTGGATCTAACACTAGTAACAGGGTTACTTGGCTTGGCTACCATGTTATCAATGCCACGGATGCTGTCAATTTCACAGTTGCTAATTTCATATTAGGTGATGTTTGGCTGCCTGCCACTGGAGTACCTTTCTATGCGGATTTGCTTTGA 1632 0.421 MATSELSINLFMLYFLSIFSIIASLASSSSSTNTICNLTPYPTFCKSNSPPKGQGDIHQYGRFFAAKSLSSSKKFLSLVSKYLKSPSKFSNSTMLALQDCNLLGDLNKDFLSKTLKSINSTNSLSISEAENLHTFLSATLTNLETCLNSLQETTSSPDHDILTHLSNGTMFYSISLAIFKRGWKANVNKERKLVERNNHMGEQRLYEVIRIQGRKLLQFGADNVVVNQTVVVNPDGSGNYTTINDAVAAAPNNTAGFNGFFVIRVVGGVYEECVSIPKNKQYLMMVGDGINQTIITGNRSVADGWTTFNSATFAVVAQSFVAINITFRNTAGAINHQAVALRSGADMSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAQVVFQDCNIYPRLPLEGQFNAITAQGRTDINQNTGTSIHNCTITAASDLATSNGTTKTYLGRPWKQYSRTIYMQSFMDSLIDPAGWVAWSGDFALDTLYYAEFDNQGPGSNTSNRVTWLGYHVINATDAVNFTVANFILGDVWLPATGVPFYADLL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0687 543 PANTHER PECTINESTERASE 10 541 - -
Apr4g0687 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 181 IPR035513 -
Apr4g0687 543 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Apr4g0687 543 PANTHER PECTINESTERASE 10 541 - -
Apr4g0687 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 180 IPR006501 GO:0004857
Apr4g0687 543 CDD PMEI-like_3 34 184 - -
Apr4g0687 543 Pfam Pectinesterase 230 528 IPR000070 GO:0030599|GO:0042545
Apr4g0687 543 Pfam Plant invertase/pectin methylesterase inhibitor 33 178 IPR006501 GO:0004857
Apr4g0687 543 Gene3D - 223 542 IPR012334 -
Apr4g0687 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 181 IPR035513 -
Apr4g0687 543 SUPERFAMILY Pectin lyase-like 226 540 IPR011050 -
Apr4g0687 543 SMART PMEI_2 27 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0687 Apr-Chr4 5638286 5640501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0687 6 543 Carbohydrate Esterase AT4G02330 54.688 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0687 K01051 - gmx:100801141 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0687 4 5638286 5640501 Apr8g1372 8 21015627 21017615 PCT