Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0686 ATGTCACACCCACGAAAAGATAGAGCCATGCTTGGTTTTCTTTTCATTCTCATTCTCTTACCTTCATCATTTGAGGCTTTCTCGTATGAAACCGTTCCCTCAGACATCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCTTGCATGGACGTTGAAAACCAAAACTCATGCCTCACAAACATTCAAAATGAGCTCATAAAAATTGGCCCTCCAAGCCCCACTTCAGTCATGAGTGCTGCACTCAAGGCCACACTCAATGAAGCCAGAGGAGCCATTGACAACATTACAAAGATAACCACATTCTCTGTCAGTTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTCTTGGATTTCTCAGTTTCTGAGCTTGCATGGTCTTTGGGAGAGATGAGGAGAATTAGAGCAGGAGATAACAATGTTCAATACGAGGGTAACCTTGAAGCGTGGCTAAGTGCAGCTCTTAGCAACCAAGACACGTGCCTTGAAGGCTTCGAGGGCACTGATCGAAGACTTGAGAGCTACATAAGTGGAAGCTTGACACAGGTCACACAACTTATTAGCAATGTTTTGTCTTTGTACACTCAGTTGCATAGTTTACCCTTCAGGCCTCCCGGGAGGAACACTACTACTACTGCTACTTCAACAACTCAAACTGATCAAAGTTTGGAGTTTCCCGAATGGATGACCGAGGGTGATCAAGAATTGCTTAAATCCAAGCCACATGGTGCACATTTTGATGCCGTTGTGGCATTGGATGGGAGTGGTCACTACCGCTCAATCATGGATGCTGTTAATGCAGCTCCTAGTTATAGCAACAGGAGGTATGTTATATACGTGAAGAAGGGGCTTTACAGAGAGAATGTAGACATGAAGAGGAAGATGACCAACATCATGCTCGTAGGTGATGGTATTGGCCAAACCATTATCACCAGCAACCGTAATTTCATGCAGGGATGGACTACTTTTCGAACTGCCACGCTTGCTGTATCTGGGAAGGGTTTCATTGCCAGGGACATGACATTTCGGAACACAGCTGGGCCAGTGAATCATCAAGCCGTGGCACTGCGTGTGGATTCAGACCAATCGGCTTTCTATAGGTGCAGTGTGGAAGGGCACCAAGACACCCTTTACGCCCACTCACTGCGACAGTTCTATCGTGAATGTGAAATCTACGGTACCATAGACTTCATTTTTGGCAATGGGGCTGCTGTTCTACAAAATTGCAAAATATACACAAGGGTCCCACTTCCGCTGCAGAAGGTTACCATCACGGCCCAAGGTAGAAAAAGCCCACATCAGAGCACTGGGTTTACAATCCAAGATAGCTATGTTCTAGCGACCCAGCCCACATATTTGGGTAGGCCATGGAAGCAATACTCTAGAACAGTTTACATTAACACATACATGAGTGGGCTTGTCCAGCCCCGAGGGTGGCTTGAGTGGTTTGGAAACTTTGCCTTGAACACTTTGTGGTATGGTGAGTACAGAAATTATGGGCCTGGGTCATCCCTTCCGGGTAGAGTTAGATGGCCCGGTTATCATGTGATCAAAGATGCTTCCACAGCTAGTTTCTTCACAGTTCAACGGTTCCTAAATGGTGACACGTGGTTGCCGAGAACAGGTGTAAAGTTCACGGCAGGTTTGACCAATTGA 1662 0.4645 MSHPRKDRAMLGFLFILILLPSSFEAFSYETVPSDIQTQDMQALIAQACMDVENQNSCLTNIQNELIKIGPPSPTSVMSAALKATLNEARGAIDNITKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDNNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHSLPFRPPGRNTTTTATSTTQTDQSLEFPEWMTEGDQELLKSKPHGAHFDAVVALDGSGHYRSIMDAVNAAPSYSNRRYVIYVKKGLYRENVDMKRKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGSSLPGRVRWPGYHVIKDASTASFFTVQRFLNGDTWLPRTGVKFTAGLTN* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0686 553 SUPERFAMILY Pectin lyase-like 247 550 IPR011050 -
Apr4g0686 553 CDD PMEI-like_3 57 201 - -
Apr4g0686 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 200 IPR006501 GO:0004857
Apr4g0686 553 MobiDBLite consensus disorder prediction 204 224 - -
Apr4g0686 553 Pfam Pectinesterase 249 537 IPR000070 GO:0030599|GO:0042545
Apr4g0686 553 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Apr4g0686 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 200 IPR035513 -
Apr4g0686 553 SMART PMEI_2 40 195 IPR006501 GO:0004857
Apr4g0686 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 200 IPR035513 -
Apr4g0686 553 PANTHER PECTINESTERASE 14 551 - -
Apr4g0686 553 Gene3D - 246 551 IPR012334 -
Apr4g0686 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 14 551 - -
Apr4g0686 553 Pfam Plant invertase/pectin methylesterase inhibitor 44 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0686 Apr-Chr4 5633842 5636034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0686 16 553 Carbohydrate Esterase AT3G05620 62.364 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0686 K01051 - gmx:100810565 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0686 4 5633842 5636034 Apr4g0686 4 5633842 5636034 ECH