Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0676 ATGGCAAGGGGAGGAAAGGTTAGTGGCAAACGCAGTTTCAGGAAGAAGGTTAGGTCGAAGGAAGGGGGTTCTGATGATTCAGATGAGGATTATGTGGTTTCAGATGATGGTAGGGATGTGTCTGATTGTCCGGAGGATTCTTTCTCCTCTTTAGATGGATGTGCTTCTGAGGAGAGTTTTGATGATTTTATAGAAGAGGAGGATGAAGGGGAGGAGGAAATTCGTCAAGTGAGGAAATTCAATAGATCAAAGGCCAAAAGTAGCGATTGTGATCAGCGGAAAATTGTAAGTAAAACATCACGAAAGAGGGGGAGGATTGCGTATGCTGAACAACTAGAACAAGAAGAAGAACAAGGGGGAGATGGAGATGATGACGATGAAGAAGAAGATGAGGATTTTAATTATGACGATGATGAGGAATTTACCCCAGAGGAAGAAGATTACTCAGCTGAGGAAGAAGAAACAATGGAGAGAAAGAAGAACAATGATGGTGTGAAAATGGGCAAGAAGGTTTTACGGAAAAGGGTTTCTGCAACTTCTACCACAGGTCGGAAAAGGAGGATATCTAGAGCTTCAAGGAAGCCAAAGAGAAAGAGAAGACGACGGAGTGGAGGATTACTGAGGAAAGTACAACTTGATGATGTCGATGATTTTATAGATAGCCCAGCAATCAGGATAAAGAGTAGGAAAAAATTGGGTTGGGAAAGGAGAAGGATTGTCCTTGAAGATTCCAATTCTGATTCAGATTGTGTATCTGGTTCGTCTGATTATGAATTTACTATCTCTGAAGAAGAGAGGGAACAGGTGAGAGAAGCTAAGGAATTGTGTTTAAGAAGGAACTTAAGGAGTTCTTCCCTGCTAGTGACAAATGAAGTGGTTGGAGTACATGACAATGTACATCAGCTACGGAAGCCTCCAGCCCGGAAGGGTAAGGAAAAGGTAGAGGAATCTCAAGGAAGAAAAGGTAAGGAAAAAATAGAAGATTTAAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGCCTGTCTGAGGAAAATAAAAGACGATTAAGGGGTGTACTAAATTGTTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTGGAATCTCGATGCCCTTTGTGTAAGCAAAGATTCAAAACAATCAGTAAACCTGCACGATCAACAGCAGGAGTTGATTTGAGAGAAGTGGTGATACAAGTGCCAGAGCGTGACCAGGTTTATCAGCCGTCTGAAGAAGAACTGAGGAGCTATATTGATCCATATGAGTATGTTATTTGCTCAGAGTGCCATCAAGGTGGGGATGATGGCCTGATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACTTATTGTGTTGGTCTGGGGAGGGAAGTACCTGAAGGTAATTGGTATTGCAATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAACTCCCAAGTGCAAGAACGCGTGACAGATCCAAGGTTGACAACTCAAAGCCTGCCTATCAGATCATCATCTGGTCTTAATGTGAGAGAGAGTATAGACCTCAACATGGTGTCTTCACCTCGTACATCTTTCAATCAAGCATTTGTGCATCTTCCATCTTCTAGATTATCTGGCCGAAATGTTGAAGGAGCTTCTCCAGTACCGGGAGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGTTACTTTCAGTAGATAGAATGAACTCTCCAACTGCCACAACAAATGGTATTTCAGCTACCAGTTCAACAAACAACTTATATAACTCTCAAATTGATCAAAGTAGGGAACCAGTCACTCAACATACAAGGACACAGGATGTAGGAACATCATATCACACATTCTTTGAGGAGAGATTATGCAACAATCTCTCTCCATTAATACAAAATGGAGATTCTTTCTCCATAAGAATAAGCAACTCAAGAAGGCAAGTGATTCACAATTCAGCGGCATTTGCCAATGGGCCTGTGAATGGGGTGCTATGGCCTGGACTTGTGGCGGCACCCCCCATATCAGGCTATGAGGCAGTCCATCAGTTTGGAAGCAGAGCTAACATTAACATTGATGGTAGTTTGCCCCCTGCGATCAAAGAAGAGAGTAATTTCTTCATTGTAAAGGAGCAGTTGCAGTCAATGGTTAATAACCACCTAAAGAGCTTCTCTCGAGATATTGATTTAGGCCGTAGTACTTTCCAAGACATTGCAAGAAGTTCCATGCATACCACACTCGCAGCTTGTGGGCTTGAGCACGACAAGAGTGAGGTTTGCACTGTGCCACCACCCGTGTGTCCCCACATTGAACTAATGGCTGGTGGACAAACGAGTCTGATTAAAGGGTGCTGTTCATCTTGCTTTGATTCTTTTGTAGGGGATGTGGTGAAAAGGATTTTGGACACAAGAATGTCATCTCAATGGTTACGATTAGGACTTTAG 2457 0.4298 MARGGKVSGKRSFRKKVRSKEGGSDDSDEDYVVSDDGRDVSDCPEDSFSSLDGCASEESFDDFIEEEDEGEEEIRQVRKFNRSKAKSSDCDQRKIVSKTSRKRGRIAYAEQLEQEEEQGGDGDDDDEEEDEDFNYDDDEEFTPEEEDYSAEEEETMERKKNNDGVKMGKKVLRKRVSATSTTGRKRRISRASRKPKRKRRRRSGGLLRKVQLDDVDDFIDSPAIRIKSRKKLGWERRRIVLEDSNSDSDCVSGSSDYEFTISEEEREQVREAKELCLRRNLRSSSLLVTNEVVGVHDNVHQLRKPPARKGKEKVEESQGRKGKEKIEDLKSEVGKQVCGICLSEENKRRLRGVLNCCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPARSTAGVDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCNGCRPVALGSSNSQVQERVTDPRLTTQSLPIRSSSGLNVRESIDLNMVSSPRTSFNQAFVHLPSSRLSGRNVEGASPVPGGGAPTLSERRWIHRQIQQLLSVDRMNSPTATTNGISATSSTNNLYNSQIDQSREPVTQHTRTQDVGTSYHTFFEERLCNNLSPLIQNGDSFSIRISNSRRQVIHNSAAFANGPVNGVLWPGLVAAPPISGYEAVHQFGSRANINIDGSLPPAIKEESNFFIVKEQLQSMVNNHLKSFSRDIDLGRSTFQDIARSSMHTTLAACGLEHDKSEVCTVPPPVCPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGL* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0676 818 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Apr4g0676 818 SUPERFAMILY FYVE/PHD zinc finger 401 476 IPR011011 -
Apr4g0676 818 CDD RING-HC_Topors 338 380 - -
Apr4g0676 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 478 IPR013083 -
Apr4g0676 818 SMART PHD_3 430 475 IPR001965 -
Apr4g0676 818 PANTHER F18C1.6 PROTEIN 1 807 - -
Apr4g0676 818 MobiDBLite consensus disorder prediction 153 170 - -
Apr4g0676 818 PANTHER F18C1.6 PROTEIN 1 807 - -
Apr4g0676 818 MobiDBLite consensus disorder prediction 114 152 - -
Apr4g0676 818 MobiDBLite consensus disorder prediction 186 204 - -
Apr4g0676 818 Pfam Ring finger domain 337 380 IPR001841 -
Apr4g0676 818 ProSiteProfiles Zinc finger PHD-type profile. 428 477 IPR019787 -
Apr4g0676 818 MobiDBLite consensus disorder prediction 302 325 - -
Apr4g0676 818 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Apr4g0676 818 MobiDBLite consensus disorder prediction 72 112 - -
Apr4g0676 818 SMART ring_2 338 379 IPR001841 -
Apr4g0676 818 MobiDBLite consensus disorder prediction 1 204 - -
Apr4g0676 818 Pfam PHD-finger 430 476 IPR019787 -
Apr4g0676 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 402 IPR013083 -
Apr4g0676 818 SUPERFAMILY RING/U-box 337 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0676 Apr-Chr4 5553961 5557667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0676 338 383 C3H Transcription Factor Family AT2G39100 45.652 1.84e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr4g0676 PHD 3.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0676 - - gmx:100797448 934.48