Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0673 ATGTCGTATCGACCCACCGGAAACGCCAGGACCGAGGTTCGCCGGAACCGATACAAGGTAGCCGTCGATGCCGAAGAAGGTCGCAGACGCCGAGAGGATACCATGGTCGAGATCCGAAAGAACCGTAGGGAAGAGAGCTTGCAGAAGAAGAGGCGCGAGGGCCTTCAAGCTCAGCAGATACCTGCATCAGTTCACTCTACTCAAATAGAGAAGAAGCTGTTGCGGTGTGTTTGGAGTGATGACAATAACTTGCAGTTTGAGGCCACAACTCAATTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAGGAAGTTATACAAGCTGGTGTGGTTCCACGCTTTGTTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTTCAGTTTGAGGCAGCCTGGGCTTTGACGAATATTGCCTCTGGAACATCTGAAAATACTAAGGTGGTAATTGATCAAGGTGCTGTCCCAATTTTTGTGAAGCTACTTGGTTCTCCCAGCGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGATTCTCCCAGATGTCGTGATCTTGTACTTAGTAATGGTGCTTTGCTTCCTCTGTTGGCTCAATTGAATGAGCATGCCAAACTTTCTATGCTCAGAAATGCTACCTGGACACTCTCAAACTTCTGCAGGGGGAAACCACAGCCTCCTTTTGATCAGGTTAAGCCTGCACTTCCTGCTCTTGCCAGTCTTATTCATTCAAATGATGAAGAAGTTTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGGTGTAATTGAAGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTATTGCACCCATCCCCTTCAGTGCTTATTCCTGCTCTTCGTACAGTTGGAAATATTGTTACTGGAGATGATGTGCAGACACAGATTATCATCAATCATCAAGCTCTTCCTTGTCTTCTGAATCTGTTGACTAATACTTTTAAAAAAAGCATCAAGAAGGAAGCATGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTAGTTGAGGCTAATTTAATTGGTCCTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAGTACCTGGTTAGTCAAGGGTGTATTAAGCCCTTATGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGGCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAAAATGTCGGCAATACTGATGGTGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCCGTGAAGATTCTTGAGACTTACTGGTTGGAGGAAGAGGATGAAACTATTCCTCCAGGGGACGCTTCTCAATCAGGGTTCAACTTTGGTGGTACTGAGCTTCCTGCTCTGCCTTCTGGTGGATTCAACTTCAACTAG 1581 0.4472 MSYRPTGNARTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQAQQIPASVHSTQIEKKLLRCVWSDDNNLQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDQGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIEAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQIIINHQALPCLLNLLTNTFKKSIKKEACWTISNITAGNKQQIQAVVEANLIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVGNTDGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETIPPGDASQSGFNFGGTELPALPSGGFNFN* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0673 526 SUPERFAMILY ARM repeat 11 495 IPR016024 -
Apr4g0673 526 Gene3D - 71 491 IPR011989 -
Apr4g0673 526 Gene3D - 13 52 IPR036975 GO:0006606
Apr4g0673 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 154 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 143 183 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 354 394 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 397 437 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 100 141 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 311 352 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 228 267 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 184 226 IPR000225 GO:0005515
Apr4g0673 526 SMART arm_5 269 309 IPR000225 GO:0005515
Apr4g0673 526 PANTHER IMPORTIN SUBUNIT ALPHA 4 516 - -
Apr4g0673 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Apr4g0673 526 PIRSF Importin_alpha 6 525 IPR024931 GO:0005737|GO:0006606|GO:0061608
Apr4g0673 526 Pfam Atypical Arm repeat 452 496 IPR032413 -
Apr4g0673 526 Pfam Importin beta binding domain 14 90 IPR002652 GO:0006606|GO:0061608
Apr4g0673 526 PANTHER IMPORTIN ALPHA 4 516 - -
Apr4g0673 526 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Apr4g0673 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 354 393 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 143 182 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 101 141 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 398 435 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 185 226 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 272 308 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 311 352 IPR000225 GO:0005515
Apr4g0673 526 Pfam Armadillo/beta-catenin-like repeat 239 266 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0673 Apr-Chr4 5536675 5542143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0673 126 386 U-box Gene Family AT3G46510 24.904 3.08e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0673 K15042 - gmx:100797267 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0673 4 5536675 5542143 Apr8g1358 8 20794752 20800334 PCT