Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0672 ATGGATCGAGAAGGAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTCCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATCAAAACCGCTTACCACAAGCTTGCTATGAAGTGGCACCCGGACAGATGGGCTCGGAATCCTGCAACTGTTGGAGAGGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCTTACTCAGTCCTTTCGGATCTGTCGAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCCTTGGAGGAAGATGGCCAAGAATTTTGTGATTTCATGCAAGAGATGATATCGATGATGAACAACGTGAAAGATGAGGGGGACAGTTTGGAGGACCTGCAAAGGATGTTCGTGGAAATGGTGGGGGGTGATGGGGTGAGCTTTGACTTGAATCAGGATCAGACGGCTGGGAAGAGAGGACGCGTCAATGGATCTAGGGGCAACGCAGCCAAGCGCAGCAACTCACGCTCTTAG 486 0.5226 MDREGGGSNGGSCYYSVLGIRRDASFSDIKTAYHKLAMKWHPDRWARNPATVGEAKRRFQQIQEAYSVLSDLSKRSMYDAGLYDPLEEDGQEFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGGDGVSFDLNQDQTAGKRGRVNGSRGNAAKRSNSRS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0672 161 PRINTS DnaJ domain signature 15 33 IPR001623 -
Apr4g0672 161 PRINTS DnaJ domain signature 33 48 IPR001623 -
Apr4g0672 161 PRINTS DnaJ domain signature 54 74 IPR001623 -
Apr4g0672 161 PRINTS DnaJ domain signature 74 93 IPR001623 -
Apr4g0672 161 Gene3D DnaJ domain 12 138 IPR036869 -
Apr4g0672 161 SUPERFAMILY Chaperone J-domain 13 88 IPR036869 -
Apr4g0672 161 SMART dnaj_3 12 74 IPR001623 -
Apr4g0672 161 Pfam DnaJ domain 14 79 IPR001623 -
Apr4g0672 161 CDD DnaJ 13 71 IPR001623 -
Apr4g0672 161 PANTHER PUTATIVE, EXPRESSED-RELATED 10 147 - -
Apr4g0672 161 PANTHER PUTATIVE, EXPRESSED-RELATED 10 147 - -
Apr4g0672 161 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Apr4g0672 161 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Apr4g0672 161 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0672 Apr-Chr4 5532409 5533948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0672 13 80 C2H2 Transcription Factor Family AT1G74250 39.130 4.09e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0672 - - gmx:548049 286.189