Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0666 ATGTCTCACACCAGCAACAATGTCGTTGGGGTTGACAACACGTTCAGAAGGAAATTCGATCGAGAAGAGTATCTGGAACGAGCCCGGGAGCGCGAGAGGCAGGAGGAGGATAATCGATCGAAACCTAAAGTTAAAGGTCCTCCCGTGCAGAGGAAGCCATTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCACTAAGTCAGCAGGCTGGATACTACTGCTCCGTTTGTGAGTGCGTGGTAAAAGACTCTGCAAACTATTTGGATCATATTAATGGGAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTTGAACGTGCTTCTCTTAAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAACGAAAAGATCTTGGCAGTTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAACGACTACGTCGAGAAAAGAAAAAAGAAAAGGAGAAGGCGGTGGAAGAACCAGAAATAGATCCTGATGTTGCTGCTATGATGGGGTTTGGAGGTTTCCGGTCATCCAAGAAATGA 603 0.4527 MSHTSNNVVGVDNTFRRKFDREEYLERARERERQEEDNRSKPKVKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQERFEVLKKRKDLGSFTEQDLDERILKQQQEEEERKRLRREKKKEKEKAVEEPEIDPDVAAMMGFGGFRSSKK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0666 200 Pfam Zinc-finger of C2H2 type 85 109 - -
Apr4g0666 200 SUPERFAMILY beta-beta-alpha zinc fingers 80 123 IPR036236 -
Apr4g0666 200 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Apr4g0666 200 MobiDBLite consensus disorder prediction 149 183 - -
Apr4g0666 200 MobiDBLite consensus disorder prediction 149 182 - -
Apr4g0666 200 Coils Coil 148 175 - -
Apr4g0666 200 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 7 200 IPR040107 GO:0000398|GO:0005681
Apr4g0666 200 MobiDBLite consensus disorder prediction 27 54 - -
Apr4g0666 200 Gene3D Classic Zinc Finger 79 117 - -
Apr4g0666 200 MobiDBLite consensus disorder prediction 27 44 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0666 4 147 C2H2 Transcription Factor Family AT3G05760 81.944 8.36e-85 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0666 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0666 K12848 - gmx:100527057 308.916