Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0660 ATGGAAGCAGTATACAGGTGGAAACCTCCTTTGTCTTGTCCAGAGGATGTTGTTAGAGTTGGGAACGCGAGCGTTTCAGCAACTACTACTGCTACCACTACTTCTGAATTGCGTCTAGGGTCAGCTGAGGCTAATTGTTACCTCCAGCTGGAAGCTCCTGCTGAACGAAATGTTACCGGGTCAGATATGTCGGATCGGCTTATCAAGATCCAGATCGCAAATCACCCTCTTTATCCTGATTTACTGGCTGCATACATAGGATGCCAAAAGGTTGGAGCACCACCGGAACTGATATCGCTTCTTGAAGGAATAGCCCGAGAAAGCCACTCCATGAATGCTCACCGTGAGATAGGGAATGGTCCTGAACTTGATGAATTCATGGAAACGTACTGCGAAGTTCTTCATAGATACAAAGAGGAGTTGTCAAAGCCCTTCAATGAAGCGACTTTGTTTTTGGGTAATATGGAATCACAACTCAGCAATCTTTGTCAGGGAACACTAGCAAAGTCATCGGACAACAACCGCTCGGCTGGTGGAGCATCAGAGGAGGAGTTAAGTTGTGGGGAGATGGAAGCTGTTGAAAGCCATGTATCTTCTTCTTCTGGTACTTGCCCAGGTGATCAAAAGCTTAAAGAAATGCTTCTTCGCAAGTACAGTGGCCATTTTAGCAGTTTGAAAAAGGAATTTCTAAAACGAAGGAAAAAGGGGAAGCTGCCACGGGATGCAAGGATGGCACTGATGGACTGGTGGAACACCAATCATAGGTGGCCATATCCTACGGAGGAAGAGAAAGTGAAATTATCAGAAATTACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAACCAGCGAAAACGGCATTGGAAACCAACTGAGGATATGCGATTTGCCATTGTGGACGGTGGCAGAGGAGGACCTATGTTTTTGTAG 936 0.4551 MEAVYRWKPPLSCPEDVVRVGNASVSATTTATTTSELRLGSAEANCYLQLEAPAERNVTGSDMSDRLIKIQIANHPLYPDLLAAYIGCQKVGAPPELISLLEGIARESHSMNAHREIGNGPELDEFMETYCEVLHRYKEELSKPFNEATLFLGNMESQLSNLCQGTLAKSSDNNRSAGGASEEELSCGEMEAVESHVSSSSGTCPGDQKLKEMLLRKYSGHFSSLKKEFLKRRKKGKLPRDARMALMDWWNTNHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTEDMRFAIVDGGRGGPMFL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0660 311 Pfam KNOX1 domain 68 109 IPR005540 GO:0003677|GO:0005634
Apr4g0660 311 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Apr4g0660 311 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Apr4g0660 311 SUPERFAMILY Homeodomain-like 231 301 IPR009057 -
Apr4g0660 311 SMART ELK_2 209 230 IPR005539 GO:0003677
Apr4g0660 311 Pfam ELK domain 210 230 IPR005539 GO:0003677
Apr4g0660 311 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Apr4g0660 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 302 - -
Apr4g0660 311 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Apr4g0660 311 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 302 - -
Apr4g0660 311 Pfam KNOX2 domain 117 163 IPR005541 GO:0003677|GO:0005634
Apr4g0660 311 SMART KNOX1_2 66 110 IPR005540 GO:0003677|GO:0005634
Apr4g0660 311 SMART KNOX2_2 113 164 IPR005541 GO:0003677|GO:0005634
Apr4g0660 311 Gene3D - 227 299 - -
Apr4g0660 311 CDD homeodomain 232 292 IPR001356 GO:0003677
Apr4g0660 311 SMART HOX_1 231 296 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0660 Apr-Chr4 5457305 5462420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0660 67 306 Homeobox Transcription Factor Family AT1G23380 54.032 1.05e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr4g0660 KNOX2 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0660 - - gmx:100814830 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0660 4 5457305 5462420 Apr8g1343 8 20506555 20511237 PCT