Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0656 ATGTCTCTGCTACCTGCGTCTCGTGCAGAGACGAGAAGGAAAGTGTATAAGATTGGAATTGACGCGGTGAAGAGTCGGAGAAGAAGAGAGGTCACCCTCATGAAGATCAGAAAGAGCAAGCGCGAAGACAATCTCTTCAAGAAACGAAGGGAACAGGAACTTGACGACCTTCTTCATATTCCCTTTACCCTCAATACGATGCCATTTGTTCCTGCTATGGCACAAGGAGTGTGGTCTGAAGACTCTGCTACACAATTGGAAGCAACTTATAAAATTAGAAACCTTTTATCATTTGTGTTGAATGTAAATGCTTCACTCATTGATGACGTAATTAAGTCAGGTGTTGTTCCTCGCTTTGTTGAGTTCTTGGCAAGACATGATGCACCCCGATTGCAGTTTGAAGCTTCATGGATTCTAACCAACATTGCTTCTGGAACATCTAATCACACAAGAGTTGTCGTTGAACTTGGTGCTGTCCCCTTATTTGTGCAGCTTCTGAGCTCTAGTACCGTTGAAATCAGAGAGCAGGCAGTGTGGGCTCTAGGTAATATAGCTGGCGATTCCCCACAGTGCAGAGATTATATTCTTAGTGAGGGTGCTCTCTTGCCATTATTATCTCAGTTGAATCCACTTTCAAGCTTATCTATTATGAGGAATGCTGCATGGACTTTATCTAACTTTTGCCGTGGAAAGCCTTATGTAGATTTTGAACAGGTAAAGCTTGCGTTTCCTGTCCTTAAGCAACTTATTCACTCGACCGATGAAGAGATTCTAACAGAAGTATGTTGGACTCTCTGTTACCTTTCGGAGGACATTGATGGAAAAGTTCAAGCTGTACTTGATGCAGGAGTTTGCCCACGACTTGTGGAGCTTCTGCAGCATCAGTCAGAGTCTATTCTTCTACCTACAATTCGGAGTCTAGGAAATATTGTGTATGGTGATGATGCTCAGACTCAGGTTCTAATTGATAGAGGAGTTCTCCCTTGTCTTCGCCAAATTATGATGCAAAATCACAAAAAAGGCATCATGAAAGAGGTTTGTTGGACAATTTCAAATATCACAGCTGGAACTAAAGCTCAAGTGCAGGCTGTCCTTGAGGCCAATATTATTCTTCCACTTGTTCGTCTTCTTCATCATGCCGAATTTGAAGTCAAGAAGGAGGCTGCCTGGGCCATCTGCAATGCCACTTATATAGGATCCCATGAGCATATTAAATTCCTGGTGATTCAAGGTTGCCTTAAGCCACTGTGCGATCTCTTAACCTGTCTGGATCTAAATGCTGTGACTCTTTGTCTAGAGGGGCTGGAGAACATTTTGAAGGTTGGAGAAGCTGACAAGGAAATGGGTCTGCATGGTGGAACCAATATTTATGCTGAAATGGTTGAAGAATATGGAGGATTGGAAAAGATTGAAAGATTGCAGAACCATGACAACAATGAAATTTATAAGCGGGCTGTGAGGATTTTGGAGAGGTTTTGGGATGAAGAAGAATTGGATGAGACGAATGTTGAGAACAGTGATGATGCTATTCAGCAAACTTTTTATTTAGGGATCAACCCACCTGACATACCCGCAGGTGGTTTTAATTTTGGATCACAGTAA 1602 0.4238 MSLLPASRAETRRKVYKIGIDAVKSRRRREVTLMKIRKSKREDNLFKKRREQELDDLLHIPFTLNTMPFVPAMAQGVWSEDSATQLEATYKIRNLLSFVLNVNASLIDDVIKSGVVPRFVEFLARHDAPRLQFEASWILTNIASGTSNHTRVVVELGAVPLFVQLLSSSTVEIREQAVWALGNIAGDSPQCRDYILSEGALLPLLSQLNPLSSLSIMRNAAWTLSNFCRGKPYVDFEQVKLAFPVLKQLIHSTDEEILTEVCWTLCYLSEDIDGKVQAVLDAGVCPRLVELLQHQSESILLPTIRSLGNIVYGDDAQTQVLIDRGVLPCLRQIMMQNHKKGIMKEVCWTISNITAGTKAQVQAVLEANIILPLVRLLHHAEFEVKKEAAWAICNATYIGSHEHIKFLVIQGCLKPLCDLLTCLDLNAVTLCLEGLENILKVGEADKEMGLHGGTNIYAEMVEEYGGLEKIERLQNHDNNEIYKRAVRILERFWDEEELDETNVENSDDAIQQTFYLGINPPDIPAGGFNFGSQ* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0656 533 Gene3D - 11 50 IPR036975 GO:0006606
Apr4g0656 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Apr4g0656 533 PANTHER IMPORTIN SUBUNIT ALPHA-4 2 506 - -
Apr4g0656 533 ProSiteProfiles IBB domain profile. 1 59 IPR002652 GO:0006606|GO:0061608
Apr4g0656 533 SUPERFAMILY ARM repeat 25 497 IPR016024 -
Apr4g0656 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Apr4g0656 533 Pfam Atypical Arm repeat 455 502 IPR032413 -
Apr4g0656 533 Pfam Importin beta binding domain 12 89 IPR002652 GO:0006606|GO:0061608
Apr4g0656 533 Gene3D - 70 493 IPR011989 -
Apr4g0656 533 SMART arm_5 271 312 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 454 494 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 314 355 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 357 397 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 188 229 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 103 144 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 231 270 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 400 440 IPR000225 GO:0005515
Apr4g0656 533 SMART arm_5 146 186 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 276 311 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 147 185 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 314 355 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 359 395 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 106 144 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 188 229 IPR000225 GO:0005515
Apr4g0656 533 Pfam Armadillo/beta-catenin-like repeat 242 269 IPR000225 GO:0005515
Apr4g0656 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Apr4g0656 533 PIRSF Importin_alpha 4 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Apr4g0656 533 PANTHER IMPORTIN ALPHA 2 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0656 Apr-Chr4 5408982 5412131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0656 110 296 U-box Gene Family AT2G28830 27.979 9.64e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0656 K15042 - pop:7487807 684.871