Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0641 ATGGCGTCGGTTGGTGTGGCACCAACATCAAGCTTGAGAGAATCCAGTGTTGTTGATAGATTGCCAGAGGAGATGAATGATATGAAAATTAGGGATGATAAAGAAATGGAAGCCACGGTTGTTGATGGTAACGGAACGGAGACGGGACATATCATTGTTACTACCATTGGGGGTAGAAACGGTCAGCCGAAGCAGACTATAAGTTATATGGCAGAGCGGGTTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAACGTATGCCACTGATATATGTGAAACTCTATACATATCAGATCTTTAGGGCACTATCTTATATTCACCGTTGTATTGGAGTCTGCCATCGAGACATTAAGCCTCAAAATCTATTAGTTAATCCACATACCCACCAGGTTAAATTATGCGACTTTGGAAGTGCAAAAGTCTTGGTATGTTTTATACATGTTAAAGGCGAACCAAATATATCATACATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGATGTTTGGTCAGTTGGTTGTGTGTTGGCTGAGCTTCTGCTTGGGCAGCCTTTATTCCCTGGCGAGAGTGGAGTTGATCAGCTGGTTGAGATCATCAAGGTTCTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAGGCACATCCATGGCACAAGATCTTTCATAAGCGCATGCCCCCAGAAGCTGTTGATTTGGTATCAAGACTGCTACAATACTCCCCTAACTTGCGGTGCTCAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGATCCAAACACGCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTCAAATCTCATGAACTGAAAGGAGTCCCTGTTGAGATTTTGGTGAAATTGATTCCAGATCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1233 0.4209 MASVGVAPTSSLRESSVVDRLPEEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVCFIHVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCSALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPVEILVKLIPDHARKQCPFLGL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0641 410 Gene3D Transferase(Phosphotransferase) domain 1 149 402 - -
Apr4g0641 410 Gene3D Phosphorylase Kinase; domain 1 53 148 - -
Apr4g0641 410 SUPERFAMILY Protein kinase-like (PK-like) 68 384 IPR011009 -
Apr4g0641 410 CDD STKc_GSK3 64 361 IPR039192 -
Apr4g0641 410 SMART serkin_6 69 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0641 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Apr4g0641 410 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Apr4g0641 410 ProSiteProfiles Protein kinase domain profile. 69 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0641 410 Pfam Protein kinase domain 69 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0641 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 408 - -
Apr4g0641 410 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0641 Apr-Chr4 5313797 5318754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0641 75 366 Core Cell Cycle Gene Families AT1G76540 33.775 1.94e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Apr4g0641 Pkinase 3.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0641 K00924 - gmx:100795659 807.749