Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0625 ATGTCTCTGCATGAGTTATACTACCGCATGGCTGAAGGGAAACTTGATCCTAAAGAGATTAACAACACATGTGCTGCACCTGATCAATCTTCCCGACCCAAGAATGATTTGTTTGAGCTGGTTTGGGAAAATGGTCATATTTCAGTGCAGGGTCAATCTAGTAGAGCTAAAAAGAGCTCAACTTTAAAAAACTTGCACAGTCCTATGGGTGAAGATAAAGATAAAGAAGTAGGATACAATATAAAGATGGGAAAGTATACTGAATTGAAAGAAATCACAAGGCCACTCCCTTCAAGTGAAGTAGATTTTAGTCAAGAAGAGCAAGACCTCATTCCTTGGTTTAATTATGGAATGATCAACTCTTTGCAACATGAATATAGTTCTGATTTTCATCAACTATCTGGGGGCACCATGAATGACATCACAACCTCAAATAACTTTTCTTTACTAGTTAGAAGAAATAGTTGTAATAAGATACACTCTTCATGTCATGTTTTAAGTTCAGAACAAGGGATCCTTTCCAAGGGATCTTCAGCTGCAGCTGGAGAAGTTGACAGTGACACTCCTAGAACTAAAGCTAGCACCACCAATCACTTATACCAGCCATCATCAATGCATCAATCTCAAAGATCATTTGCATCAGTTAGATCAAGAATATCAGATATAGCTGAAAATAATACTAACAATGCAACCCAGCATGAACAAATCCCTCTGATTCCATCGGCCTCAAGGGGTTTTTCTAGCTTGCAAGGTCCAGTTATGTCTAGCAATAGCTCCAATATGATGAATTTTTCCCATTTTGCAAAACCCGCTGTTATTGTCAAGGCTAATCTTGAGAGCATTGGCTTGACACCAAGATCAGCGAGTGTAGGAGTGAAGAATAAAGGTGTTGCCGCAACTGGAAGCAATCCTACTGAATCAACACAAGTTGATTTAAGTGGAGAATGTCCACATAAATCACCTATACACTGTTATCAGGTTGTTGAACCATCCAAGTTTGAGCCAAAATCTGCTGAGCATGATGCTGATGTTTCTACAAAGTCTGAACCTTCTGGTAAAGAAGATGTGCCTAAGATTGATCAAAAGTCATATCTAGTTGTTGGTGAAAGTGGAAGAAAAGAACAAGAAGCTCTTGAAAAAAGGGTGGAGCCAGCAGTAGTATCTTCCTCTGTTTGCTCTGGCACTGGTGCAGAGAGAGGTTCACACCAGCCAAATCAAAATTTGAAGCGAAAAAGTCTAGACACTGAGGATTTTGAGTGCCACAGTGAAGATATTGAGGAAGAATCAGTTGGTGTTAAAAAGGAAGCTCCTGCCAGACGAGTTGGCTCCAAGAGAAGCCGTTCAGCTGAAGTGCATAACCTATCTGAAAGGAGAAGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTGCAACTTCAAATTATGTCAATGGGAACTAGTTTATACATGCCTACTATGATGTTACCTGCGGGAATGCACCACATGCATGCATCACATATGACTCCTTTTCCACCAACGGGTATTAGCATGCAAATGGGGTTGGGTTGTGGAATGGGCATGGCTGATGTTAATGATGGATCTTCCACATTCCCAATGATTCAAGTGCCCAAAATCCAAGCAACTCAAATTCCGGTTGCACATGCACTTGGATCCAATGCTTTAAATGGAATGGCTAGATCAAATCCTCAAGTGTTTGGGATGACAATGCCACATGCTCCCATGTTTTCTTTTTCAGGAGAACCTCTTATGAATATACCAGCTCTAGGACTAAATGCTTGTGGAACAACAGGGCTTATGAAAGCTATGGATTTGGCTTCACCCTCTAGCTTAAAGGATCCAATGCCAACTATGAATTCACATGTTGTGCAAAACACTAATGCTTGTAACTCAACAAATCACATGTCCACGCAGTGTGAAGCAACAATTGGTGGATTTGAACACTCAACTTGTGAACTTAATTTTGGTCATGCCTCTTCAGCAACTGACAGAGCTGTTAATCATGGTTATGATTGA 2097 0.4039 MSLHELYYRMAEGKLDPKEINNTCAAPDQSSRPKNDLFELVWENGHISVQGQSSRAKKSSTLKNLHSPMGEDKDKEVGYNIKMGKYTELKEITRPLPSSEVDFSQEEQDLIPWFNYGMINSLQHEYSSDFHQLSGGTMNDITTSNNFSLLVRRNSCNKIHSSCHVLSSEQGILSKGSSAAAGEVDSDTPRTKASTTNHLYQPSSMHQSQRSFASVRSRISDIAENNTNNATQHEQIPLIPSASRGFSSLQGPVMSSNSSNMMNFSHFAKPAVIVKANLESIGLTPRSASVGVKNKGVAATGSNPTESTQVDLSGECPHKSPIHCYQVVEPSKFEPKSAEHDADVSTKSEPSGKEDVPKIDQKSYLVVGESGRKEQEALEKRVEPAVVSSSVCSGTGAERGSHQPNQNLKRKSLDTEDFECHSEDIEEESVGVKKEAPARRVGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGTSLYMPTMMLPAGMHHMHASHMTPFPPTGISMQMGLGCGMGMADVNDGSSTFPMIQVPKIQATQIPVAHALGSNALNGMARSNPQVFGMTMPHAPMFSFSGEPLMNIPALGLNACGTTGLMKAMDLASPSSLKDPMPTMNSHVVQNTNACNSTNHMSTQCEATIGGFEHSTCELNFGHASSATDRAVNHGYD* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0625 698 PANTHER TRANSCRIPTION FACTOR PIF3 1 664 IPR044273 GO:0003700|GO:0006355
Apr4g0625 698 MobiDBLite consensus disorder prediction 296 314 - -
Apr4g0625 698 CDD bHLH_AtPIF_like 447 509 - -
Apr4g0625 698 MobiDBLite consensus disorder prediction 425 460 - -
Apr4g0625 698 MobiDBLite consensus disorder prediction 188 208 - -
Apr4g0625 698 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 444 509 IPR036638 GO:0046983
Apr4g0625 698 MobiDBLite consensus disorder prediction 388 460 - -
Apr4g0625 698 Gene3D - 442 505 IPR036638 GO:0046983
Apr4g0625 698 Pfam Helix-loop-helix DNA-binding domain 451 497 IPR011598 GO:0046983
Apr4g0625 698 PANTHER TRANSCRIPTION FACTOR PIF3 1 664 - -
Apr4g0625 698 MobiDBLite consensus disorder prediction 388 408 - -
Apr4g0625 698 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 447 496 IPR011598 GO:0046983
Apr4g0625 698 MobiDBLite consensus disorder prediction 52 66 - -
Apr4g0625 698 MobiDBLite consensus disorder prediction 333 360 - -
Apr4g0625 698 SMART finulus 453 502 IPR011598 GO:0046983
Apr4g0625 698 MobiDBLite consensus disorder prediction 295 316 - -
Apr4g0625 698 MobiDBLite consensus disorder prediction 52 74 - -
Apr4g0625 698 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0625 Apr-Chr4 5182731 5187692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0625 1 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.533 8.84e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0625 HLH 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0625 K12126 - gmx:100794974 686.026