Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0624 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTCCGTAAGGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAGCATGGACATGGATGTTGGAGCTCGGTTCCAAAACTAGCTGGTTTGCAACGGTGTGGGAAGAGCTGCAGATTAAGGTGGATAAATTATCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAGAACTCGATCATTGAACTTCACGCTGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCGGGAAGAACTGACAATGAGATAAAAAATCTATGGAATTCATGCCTCAAGAAGAAGCTAAGGCAAAAAGGTATTGACCCAAACACCCACCAACCCCTCTCTGAGGTTGAGAACGACCGGGAAAACCCACTCATAGCTGACAAAAGCAACCAAAAAACCTCACTGGGATCCAATGAGGTGAGTGTTGTTGAGGCAGCAAAACCAAACCCAATAACCACTTCAATGCCTACAGAGAGATATTCCCTTGAAGTTTCCCCAAGCTCCAAGATCAACAACTGCAGCAGCACCCTAGATAGGTTTGGTACCTGTCATGACAACTCCATCCCTAGTTGCAAACCTTCTGATATGGTAGGAATGGGGTATTTCTCTTACCAGCATCTGAACTATGGATCAACCATGGGACTCACTGCAAATCCCAACACCCAACTTTGCTTCATACCAAGTTCCACTTCTTCCCAAATGATGTCATCAGAGCTCAATTCTAGCAGCATGCTCCATTCAGTGTACCCAAAGCCCACTGTTAGCCTTCAGTCCAATGATCCTTCTTCCATATCTTCTGGGGACATTGATGGGGTTCAGAACTGGGAAGCTCAAGCAAGTACCTTCAGTACTAACAACGCAACCAAAAGCAATGGAAGCAGTAGCTGCAGCATTCAACTACAAAGCAGCACTAACTTCCTTGATAGCACCGCCCTAACCTGGGGGATGCAGCAGGCAGAATCTGCAAAGGCTGAGAAAGATGCTCATTCTTCTCATGTACCCTTACAAGCTGAGCAAGAAGACATTAAATGGTGTGAGTATCTCAACACCCCCTTTTTTCTAGGAAACACAGTGCAGCATCAAACCACTCACTCTATCTACAATGATGAGGTCAAGCCAGAAACAGGCTTTATTGCAGAGGAATCAAGTACTAGTTGGCACCATAGCCAGCATTTTCAGCCTTCAGATATATATACCAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACACTGTAG 1290 0.455 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPNTHQPLSEVENDRENPLIADKSNQKTSLGSNEVSVVEAAKPNPITTSMPTERYSLEVSPSSKINNCSSTLDRFGTCHDNSIPSCKPSDMVGMGYFSYQHLNYGSTMGLTANPNTQLCFIPSSTSSQMMSSELNSSSMLHSVYPKPTVSLQSNDPSSISSGDIDGVQNWEAQASTFSTNNATKSNGSSSCSIQLQSSTNFLDSTALTWGMQQAESAKAEKDAHSSHVPLQAEQEDIKWCEYLNTPFFLGNTVQHQTTHSIYNDEVKPETGFIAEESSTSWHHSQHFQPSDIYTKDLQRFSVAFGQTL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0624 429 SMART sant 66 114 IPR001005 -
Apr4g0624 429 SMART sant 13 63 IPR001005 -
Apr4g0624 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Apr4g0624 429 PANTHER MYB DOMAIN PROTEIN 55 1 422 - -
Apr4g0624 429 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g0624 429 PANTHER HOMEODOMAIN-RELATED 1 422 - -
Apr4g0624 429 Gene3D - 11 67 - -
Apr4g0624 429 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr4g0624 429 CDD SANT 17 61 IPR001005 -
Apr4g0624 429 MobiDBLite consensus disorder prediction 120 156 - -
Apr4g0624 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr4g0624 429 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr4g0624 429 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g0624 429 Gene3D - 68 139 - -
Apr4g0624 429 CDD SANT 69 109 IPR001005 -
Apr4g0624 429 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0624 Apr-Chr4 5173814 5175600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0624 1 429 MYB Transcription Factor Family AT1G09540 46.136 1.11e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0624 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0624 K09422 - gmx:100788976 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0624 4 5173814 5175600 Apr8g1299 8 19317920 19319888 PCT