Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0618 ATGTCCTCCTCAAGGCGTAGCCAATCATCCAGCAACAATTCAGGCAGATCATCAAGACACAATGCTAGGATAATTGCTCAAACCACTGTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCTGGTAGTTCTTTTGACTACTCCAACTCAGTGAGGTTTTCTCCTGGCTCAGGCACAGCTAGTGGAGAACATCAATCAATGTCTGATAGAGTAACAACTGCATATCTCCATCAGTTTCAGAAAAGCAAGCTTATTCAACCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACATGCAAAGTCATTGCATACAGTGAGAATGCACCTGAAATGCTGACTATGGTTAGTCATGCTGTTCCCAGTGTTGGTGATCACCCTGCTCTTGGCATTGGTACTGACGTAAGAACAATTTTCACTGCCCCAAGTGCTTCTGCATTTCAGAAGGCACTAGGATTTGGAGAGGTTTCACTTCTTAACCCAATTCTAGTTCATTGCAAAACCTCCGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGTGGCTTGATCATTGATTTTGAGCCAGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAGTCCTACAAGCTTGCAGCAAAAGCAATAACCAGGTTGCAATCTTTGCCTAGTGGGAGCATGGAAACACTATGTGACACAACGGTTCAAGAAGTGTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAGTTTCATGAGGATGATCATGGAGAAGTGATTGCAGAGGTAAAAAAGCCAGGCCTAGAGCCGTATCTGGGTTTGCACTATCCAGCCACTGATATTCCTCAGGCTACACGCTTTTTGTTTATGAAGAACAAGGTTCGTATGATAGTTGATTGTCGTGCAAAGCATGTGAAAGTCCTTCAAGACAAAAACATTCCATTTGATTTAACTTTGTGTGGATCCACCTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGAGAACATGAATTCTAGTGCTTCCTTGGTTATGGCAGTTGTAGTCAATGACAATGATGAAGATGGAGATAGCTCTGATGCTGTTCAGCCACAAAAGAGAAAGAGGCTTTGGGGTCTAGTAGTTTGCCATCACACTACTCCCAGGTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAATTCTTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAACTAGAAATAGAGTATCAGATTGTTGAGAAGAATATCCTGCGCACTCAAACACTCTTGTGTGATATGTTGATGCGAGATGCACCCCTTGGCATTGTATCACAAAGGCCTAATATAATGGATCTTGTGAAATGTGATGGAGCAGCCCTGTTGTATAAGAACAAGGTATGGAAATTAGGGGTAACGCCAAGCGAATCACAGATTCGAGAGATAGCTTTATGGCTCTCTGAGTGCCATAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCAGATGCAGGGTTCCCAGGGGCTGCTGCTCTTGGTGATATTGTATGTGGAATGGCAGCTGTGAGAATTGCAACCAAAGACATGGTTTTCTGGTTTCGGTCTCACACTGCTGCTGAAATCAGATGGGGTGGTGCAAAGCATGAACCTGGTGATAGGGATGATGGTAGGAGGATGCACCCAAGATCATCCTTCAAGGCTTTCCTTGAAGTTGTTAAGACAAGGAGCTTACCGTGGAAGGACTATGAAATGGATGCTATCCACTCATTGCAGCTAATACTGAGAAATGCATTCAAAGATACCGAGAGTATGGATATAAGCACGTATGCTATCAATACAAGACTAAACGATTTGAAGATTGAAGGGATGCAAGAACTGGAAGCAGTGACAAGTGAGATGGTAAGGTTGATTGAAACAGCAACGGTGCCAATTTTGGCTGTTGATGTTCATGGTATGGTCAATGGATGGAATACAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGAAGAAGCTATTGGGAAGCATTTACTCACACTTGTTGAAGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAAGGTGAAGAAGAGAAGAATGTTCAATTTGAGATCAGAACACATGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTAGCCCAAGATATAACTGCTCAGAAGACAGTGATGGATAAATTCACCCGAATTGAAGGCGACTACAAGGCGATTGTACAGAACCGAAACCCATTGATCCCGCCAATATTTGGCACAGATGAATTTGGCTGGTGCTGTGAATGGAATTCTGCTATGACAAAGTTAACTGGATGGAAGAGAGAGGAGGTGATGGATAAAATGCTCTTAGGAGAGGTTTTTGGGACTCAGATAGCATGTTGTCGTCTAAGGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAATAAAGCCATGACTGGTTTGGAAACTGAGAAGGTTCCTTTTGGTTTCTTTACTCGTAAGGGGAAGTATGTAGAATGCTTGCTATCTGTGAGTAAGAAATTGGATGGAGAAGGTGTAGTTACTGGGGTCTTTTGCTTCTTGCAACTAGCTAGTCCTGAGCTGCAACAAGCATTGCATATTCAGCACTTATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTGACTTACCTGAAAAGGCAAATCCGGAATCCTTTATGTGGGATTGTGTTCTCCAGGAAATTGTTAGAGGGTACTGAGTTGGGAACTGAACAAAAACAACTTCTGCAAACTGGCACTCGGTGCCAACGCCAACTTAGCAAAATTCTGGATGACTCTGATCTTGACAGCATTATTGATGGATACTTGGATTTGGAGATGGTAGAATTTACTCTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAATGCAAAGGGTATCAGAGTAGTCAATGATGTTGAAGAACAGATCACAACAGAAACCTTACATGGTGATAGTCTTCGGCTTCAGCAGATCCTAGCCGACTTTTTATCGATTTCCATCAATTTCACCCCAACTGGAGGTCAAGTTGTTGTAGCAGCCTCATTAACCAAAGATCAGTTAGGGAAACTAGTCCATCTTGCTAATTTGGAGCTAAGCATAACACATTATGGTATCGGAGTTCCAGAAGCATTGCTGAACCAAATGTTTGGACGTGATGGACATGAATCTGAAGAGGGTATTAGCCTTCTGATCAGCAGAAAGCTGCTAAAGCTAATGAATGGAGATGTACGTTATATAAGGGAAGCAGGCAAATCATCTTTCATCTTATCTGTTGAACTTGCTGCAGCCCATAAATTGAGGGCTTAA 3390 0.4248 MSSSRRSQSSSNNSGRSSRHNARIIAQTTVDAKLHATFEESGSSFDYSNSVRFSPGSGTASGEHQSMSDRVTTAYLHQFQKSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDVRTIFTAPSASAFQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGGLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMETLCDTTVQEVFELTGYDRVMAYKFHEDDHGEVIAEVKKPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDKNIPFDLTLCGSTLRAPHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQRPNIMDLVKCDGAALLYKNKVWKLGVTPSESQIREIALWLSECHRDSTGLSTDSLSDAGFPGAAALGDIVCGMAAVRIATKDMVFWFRSHTAAEIRWGGAKHEPGDRDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTESMDISTYAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVHGMVNGWNTKIAELTGLPVEEAIGKHLLTLVEDFSVDRVKKMLDMALQGEEEKNVQFEIRTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREEVMDKMLLGEVFGTQIACCRLRNQEAVVNFSIVLNKAMTGLETEKVPFGFFTRKGKYVECLLSVSKKLDGEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYLKRQIRNPLCGIVFSRKLLEGTELGTEQKQLLQTGTRCQRQLSKILDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQVMTKSNAKGIRVVNDVEEQITTETLHGDSLRLQQILADFLSISINFTPTGGQVVVAASLTKDQLGKLVHLANLELSITHYGIGVPEALLNQMFGRDGHESEEGISLLISRKLLKLMNGDVRYIREAGKSSFILSVELAAAHKLRA* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0618 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1011 1120 IPR003594 -
Apr4g0618 1129 SUPERFAMILY GAF domain-like 203 403 - -
Apr4g0618 1129 CDD PAS 633 739 IPR000014 -
Apr4g0618 1129 CDD PAS 766 877 IPR000014 -
Apr4g0618 1129 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Apr4g0618 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1124 - -
Apr4g0618 1129 PANTHER PHYTOCHROME A 1 1124 - -
Apr4g0618 1129 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 436 456 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 521 540 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 554 572 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355|GO:0009584
Apr4g0618 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 735 IPR035965 -
Apr4g0618 1129 SMART HisKA_10 899 964 IPR003661 GO:0000155|GO:0007165
Apr4g0618 1129 SMART HKATPase_4 1011 1123 IPR003594 -
Apr4g0618 1129 ProSiteProfiles Histidine kinase domain profile. 906 1125 IPR005467 -
Apr4g0618 1129 SMART pas_2 624 690 IPR000014 -
Apr4g0618 1129 SMART pas_2 754 823 IPR000014 -
Apr4g0618 1129 Pfam Phytochrome region 419 594 IPR013515 GO:0006355|GO:0009584
Apr4g0618 1129 Gene3D PAS domain 81 326 - -
Apr4g0618 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 396 IPR016132 -
Apr4g0618 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 961 1115 IPR036890 -
Apr4g0618 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 875 IPR035965 -
Apr4g0618 1129 SMART gaf_1 223 416 IPR003018 GO:0005515
Apr4g0618 1129 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g0618 1129 ProSiteProfiles PAC domain profile. 697 751 IPR000700 -
Apr4g0618 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Apr4g0618 1129 ProSiteProfiles PAS repeat profile. 622 692 IPR000014 -
Apr4g0618 1129 Gene3D PAS domain 616 753 - -
Apr4g0618 1129 Coils Coil 403 423 - -
Apr4g0618 1129 Pfam PAS fold 74 190 IPR013654 GO:0006355
Apr4g0618 1129 Pfam PAS fold 625 739 IPR013767 GO:0006355
Apr4g0618 1129 Pfam PAS fold 755 877 IPR013767 GO:0006355
Apr4g0618 1129 Pfam GAF domain 223 406 IPR003018 GO:0005515
Apr4g0618 1129 Gene3D PAS domain 768 880 - -
Apr4g0618 1129 Gene3D - 204 567 IPR029016 -
Apr4g0618 1129 Gene3D - 411 584 IPR043150 -
Apr4g0618 1129 Gene3D - 937 1116 IPR036890 -
Apr4g0618 1129 TIGRFAM sensory_box: PAS domain S-box protein 629 745 IPR000014 -
Apr4g0618 1129 PIRSF Phytochrome_conventional 1 1129 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Apr4g0618 1129 SUPERFAMILY GAF domain-like 414 592 - -
Apr4g0618 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 192 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0618 Apr-Chr4 5124039 5145769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0618 1 1126 Histidine Kinase Gene Family AT1G09570 78.350 0.0 1835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0618 K12120 - gmx:100791098 1966.43