Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0616 ATGGCTTCTATCATTGGTGTCTCCTCTATACACCAAACTCCCTCTCTCGAACTATACAAAAGACCAACCACAACTGCTTCTACTTCCTCCGTTCGGTTACAATGTTTAGACTCAAAGTCTCACTTCAACAACGCCCTCAGAGCCCACCGTCACAAAACTGGCCTCAAGCCCACACTCACTTTCGTCCCTTCCGCCATTGCCACGCCCAATTCTTCCCTCCTCAGCGAAGAAGCCTTCAAAGGATTGGGCCGCGGATTCGACGACGACGCCCAAATCGACGACGAATTTGGTTACGCTTCTGAATCCGACTCCTCTTCTACCAACCCCGACGAACTCGACATTTCCAAGTTAGGTTTACCTTCTCCTCTCGTCGATTCTCTCCATAACCGTGGAATCACTCGTCTTTTCCCCATTCAGAGAGCCGTGTTAGTTCCTGCTCTTGAAGGTAGAGATATCATTGCTCGAGCTAAGACTGGGACTGGAAAGACACTAGCATTTGGGATTCCGATTATTAAAGGCCTCACTGAAGATGAGCATGCACCTTCTCACAGGAGGTCTGGTCGTCTTCCAAGAGTTTTGGTTCTTGCACCAACCAGGGAGTTGGCAAAGCAAGTGGAGAGGGAGATAAAAGAATCTGCGCCTTATTTAAACACTGTTTGTGTTTATGGGGGTGTTTCTTATGTTACCCAGCAAAGTGCGCTTTCGCGCGGTGTTGACGTGGTGGTTGGAACGCCGGGTAGAATTATTGACCTGATAAATGGGAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTTCTTGACGAAGCCGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTGATTCTAGAGAAGCTCCCGTCTAAGAGGCAGAGTATGCTTTTCTCTGCTACCATGCCTAGTTGGGTTAAGAAATTGGCTAGAAAATATTTGGACAACCCTTTGACGATTGATTTGGTTGGCGATGAGGAAGAAAAGCTTGCTGAAGGGATAAAACTATTTGCCATGGGAGCCACTGCCACTTCAAAGAGAACAATTCTTTCAGATGTTATAACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAGAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTTCTCGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGACTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACGTTTGTACATCGTTCTGGTCGTACTGGGCGGGCAGGGAAACAAGGTACTGCCATTTTATTGTACACCAGTAGCCAGAGGAGAACTGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCACCAGCTATGGAAGAGGTTTTGGGAGCATCTGCGGAGCAAGTTGTTTCCACACTTGGTGCAGTTCATCCTGAGTCTGTTGCGTTTTTCACCCCAACTGCACAAAAATTGATTGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCTCTAGCACAACTGAGTGGATTCTCCAGACCTCCATCGTCCCGGTCTCTTATCACCCATGAACAGGGATGGATCACATTGCAACTGACTCGAGATTCAGATAATACTACTAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTATCTGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATCCATTTAATTGCGGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCCGAGGAAATCGCTAAAGAGTTACTCAATAGGGACATACCACCCGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGAAGAGGTTCAGGTTCTAGGGATCGCAGAAGTTTTAAAACCTCACGGGGATGGGGTAGGGACCAAGACTCTGATGATGAGTTTGGTGATCAATTTAGGAGAGGAGGTAGAAATTCTAAAACTGGCAACAGCTGGTCTCGAGGAGGAAAAAGCAGTAGGGATGGGGATGATTGGCTAATTGGAGGCAGACGATCAAGCAGGTCTTTATCATCAGACAGAGGTAGCTTTGGAGGGTCCTGTTTTAATTGCGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAACCGGCGAACCTTTTATTAA 2286 0.4589 MASIIGVSSIHQTPSLELYKRPTTTASTSSVRLQCLDSKSHFNNALRAHRHKTGLKPTLTFVPSAIATPNSSLLSEEAFKGLGRGFDDDAQIDDEFGYASESDSSSTNPDELDISKLGLPSPLVDSLHNRGITRLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRVLVLAPTRELAKQVEREIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPSKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLFAMGATATSKRTILSDVITVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLGASAEQVVSTLGAVHPESVAFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDNTTRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRSNRRGSGSRDRRSFKTSRGWGRDQDSDDEFGDQFRRGGRNSKTGNSWSRGGKSSRDGDDWLIGGRRSSRSLSSDRGSFGGSCFNCGESGHRASDCPNRRTFY* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0616 761 PANTHER - 53 753 - -
Apr4g0616 761 CDD GUCT_Hera 548 629 - -
Apr4g0616 761 ProSiteProfiles Zinc finger CCHC-type profile. 741 756 IPR001878 GO:0003676|GO:0008270
Apr4g0616 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 320 IPR014001 -
Apr4g0616 761 MobiDBLite consensus disorder prediction 650 695 - -
Apr4g0616 761 Gene3D - 113 324 IPR027417 -
Apr4g0616 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 475 IPR027417 -
Apr4g0616 761 Pfam GUCT (NUC152) domain 541 642 IPR012562 GO:0003723|GO:0004386|GO:0005524
Apr4g0616 761 MobiDBLite consensus disorder prediction 625 735 - -
Apr4g0616 761 SMART c2hcfinal6 740 756 IPR001878 GO:0003676|GO:0008270
Apr4g0616 761 SMART helicmild6 374 454 IPR001650 -
Apr4g0616 761 Pfam DEAD/DEAH box helicase 136 309 IPR011545 GO:0003676|GO:0005524
Apr4g0616 761 CDD SF2_C_DEAD 359 463 - -
Apr4g0616 761 Pfam Zinc knuckle 740 756 IPR001878 GO:0003676|GO:0008270
Apr4g0616 761 Gene3D - 342 526 IPR027417 -
Apr4g0616 761 Pfam Helicase conserved C-terminal domain 348 454 IPR001650 -
Apr4g0616 761 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 53 753 - -
Apr4g0616 761 SMART ultradead3 131 337 IPR014001 -
Apr4g0616 761 Gene3D - 723 759 - -
Apr4g0616 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 494 IPR001650 -
Apr4g0616 761 SUPERFAMILY Retrovirus zinc finger-like domains 721 759 IPR036875 GO:0003676|GO:0008270
Apr4g0616 761 CDD DEADc 123 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0616 Apr-Chr4 5112085 5118296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0616 107 476 Eukaryotic Initiation Factors Gene Family AT1G72730 37.008 2.74e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0616 - - gmx:100779706 1231.47