Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0609 ATGGCGTCATCATTATCAGCTCAATTGCTTCAATGTCAGAACTCACTGCCTCTTTGTCATTTCCAGGGTAACTTTAGCCAACATGTGTCTAAGGTTCGGAGGCCACATGTGGTCTGTTACAGTACCAGATCACAGCTTGGTTACAGTAAAGCATTGGCATCAAAATCACATTATGCATTTAGGTTTTCTGTTACGCGACAATCTGAAGCAAGATCAACTAGATATAGGAGAATGACATGCGTCAGTGCTACAGATAATGAGGTTCTAGAGCTGCAAGCCAAAGTGACAACCAAGTGTTTCTTTGATATAGAAGTTGGGGGTGAAACGGTCGGCAGGATCGTTTTGGGCGTATTTGGAGAAGTTGTTCCTAAAACAGCTGAAAATTTCCGCGCTCTGTGCACAGGGGAGAAAGGATACGGATACAAAGGAAGTTCCTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGAGACTTTACTGAAGGAAATGGAACTGGTGGAAAAAGTATCTATGGCTCTAGTTTTAAAGATGAGAGTTTTGCATTGAAGCATATTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAATTTTTCATTTGCACTGTAAAGACTCCGTGGCTAGATGATCGCCATGTTGTATTTGGACATGTCATCGATGGAATGGATGTCGTGAAGACACTTGAATCACAGGAGACAAGCAGGTTAGATATCCCTCGGAAGCCTTGCAGAATTGTTAATTGTGGAGAACTGCCTAATGATGGTTGA 789 0.4233 MASSLSAQLLQCQNSLPLCHFQGNFSQHVSKVRRPHVVCYSTRSQLGYSKALASKSHYAFRFSVTRQSEARSTRYRRMTCVSATDNEVLELQAKVTTKCFFDIEVGGETVGRIVLGVFGEVVPKTAENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGKSIYGSSFKDESFALKHIGPGVLSMANAGPNTNGSQFFICTVKTPWLDDRHVVFGHVIDGMDVVKTLESQETSRLDIPRKPCRIVNCGELPNDG* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0609 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 52 261 - -
Apr4g0609 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 257 IPR002130 GO:0000413|GO:0003755
Apr4g0609 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Apr4g0609 262 Gene3D - 83 261 IPR029000 -
Apr4g0609 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 52 261 - -
Apr4g0609 262 CDD cyclophilin_ABH_like 98 256 - -
Apr4g0609 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Apr4g0609 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Apr4g0609 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Apr4g0609 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Apr4g0609 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Apr4g0609 262 SUPERFAMILY Cyclophilin-like 91 258 IPR029000 -
Apr4g0609 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 256 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0609 Apr-Chr4 5045777 5048314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0609 70 260 U-box Gene Family AT5G67530 38.021 1.53e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0609 K03768 - gmx:100785805 448.743