Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0605 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTTTGGTCACCTGAGGAGGATGAAAAACTTCTCAAGCATATTTCTAAGTATGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTGAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAAGAAGAAAACATCATCATTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCAGCACAATTGCCTGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTAAGGCAAAGAGGTATAGACCCTGTCACACATAAGCCACTGTCTGAGGTTGAGAACGGAGAGGAGGACAAGACAAGGAGCCAAGAAAAAGTACCAGAATTATCCAATGAATTGAACCTCCTAAATTCAGAAAGCTTCAAGTCAGATGAAGCCTCCTATGAGCACAGAACATCCCCAATTGCCCCAAAAGGGTATGCAACCGAGATGGAAGGTTCTTCCAGCTCCAAGATTAACAGCAAAAACGACCCCAACTTGATAACCAACTGTTCTAATAAGGACTTGTTTTTAGACAGGTTTATGACATCCCACCAAGAGAGCTACACCACAAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGAGTTATGCATCATCCACAGACACTCTCCCAACCAATTCAAACTCTTGTCATTGGTTCAGCCAAACTGCAAGGCCGTTTGATATGAACTCTGAATTCACTTCCAATGTTATGTCTATTCTTCCCCCTACAGCTACCTCATTCCTCAATTCTAGTTCTTTTTGCTACAAGCCATCACTTGCTGTCCCCTCAGAAGACATTTCAATTTCAACAGCCTCTTTTGCTTTGAATGGATCCAATTACTGGGAAGCCAGTGCCTCCAACAACAGTAATAGTAGCAACACAAGTGATGGCAGCAGAGAATTGACAAGTAGCAGCCCCTTAAACGTGAAGAACAGTGTCCTTTCTTCATGGGGTATGACAGATTGTAGCACCTCCACCAAAGAGGCTCAAATTTCTCTGATGGAAAACCAAACAGAAGAAGCCAAGTGGTCTGAATACCTTCACAACCCAATGTTAATGCTGGCAGCTCCTGAATCTTTATGCAACCAGATAAAGCCAGCTACACATTTGGTACCTGATCATGCTTTAGGGGCCATGTTGCCTCATTCAAAGGAGCAAGAACAGTCCCAAACTTCAAGTATCTTTTCCAAGGACATCCAGAAGCTAACAGCAGCTTTTGGACATATATAG 1347 0.4306 MGRHSCCYKQKLRKGLWSPEEDEKLLKHISKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENIIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEDKTRSQEKVPELSNELNLLNSESFKSDEASYEHRTSPIAPKGYATEMEGSSSSKINSKNDPNLITNCSNKDLFLDRFMTSHQESYTTSCQPSDLMGNYPLQMSYASSTDTLPTNSNSCHWFSQTARPFDMNSEFTSNVMSILPPTATSFLNSSSFCYKPSLAVPSEDISISTASFALNGSNYWEASASNNSNSSNTSDGSRELTSSSPLNVKNSVLSSWGMTDCSTSTKEAQISLMENQTEEAKWSEYLHNPMLMLAAPESLCNQIKPATHLVPDHALGAMLPHSKEQEQSQTSSIFSKDIQKLTAAFGHI* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0605 448 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g0605 448 Gene3D - 11 67 - -
Apr4g0605 448 CDD SANT 17 61 IPR001005 -
Apr4g0605 448 SMART sant 66 114 IPR001005 -
Apr4g0605 448 SMART sant 13 63 IPR001005 -
Apr4g0605 448 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr4g0605 448 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g0605 448 MobiDBLite consensus disorder prediction 122 194 - -
Apr4g0605 448 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g0605 448 Coils Coil 139 159 - -
Apr4g0605 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr4g0605 448 Gene3D - 68 147 - -
Apr4g0605 448 PANTHER HOMEODOMAIN-RELATED 1 442 - -
Apr4g0605 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr4g0605 448 CDD SANT 69 109 IPR001005 -
Apr4g0605 448 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr4g0605 448 MobiDBLite consensus disorder prediction 324 345 - -
Apr4g0605 448 PANTHER MYB DOMAIN PROTEIN 55 1 442 - -
Apr4g0605 448 MobiDBLite consensus disorder prediction 147 162 - -
Apr4g0605 448 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0605 Apr-Chr4 5016611 5018795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0605 1 145 MYB Transcription Factor Family AT4G01680 88.966 9.93e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0605 Myb_DNA-binding 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0605 K09422 - gmx:100037467 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0605 4 5016611 5018795 Apr8g0016 8 183992 185766 PCT