Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0603 ATGCTAGACTCCGCTCGCTCAGGGATGACAAGAAACTCCTCCCATCTAGCCTCCATTTATGATAACGATTTTCTTGAGCTGGTATGTGAAAACGGTCAAGTTGTTGTACGAGGAGGTTCATCAAATAGAACACAAAAGACCCCTTCCTGCATCGGGTATTCCATAAGCCCTTCACGTAAGCAAACAACAGATGAAGATGCTTGCATTGCAAAAGGAACAAGGTTAAGCACATTATACACACTTTTAGATCACTTTCCACCTCAAAGGGACGCTGACAAGAGCTCTTCAAATCAAAGCAATGACCAAGAGTCCTCTCAATCCTCCCATACCAAGAATTCGTGTAAGCTGAATGAAGAATTTGCAAACTTACTGGGACCAGAAAAAGACTATAAGCCCGTTACCACAGATAATGTTCATTTGTGCCCATACTCCTCACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACAGACCCAGGCCAAGCACCAGCAACAAACTCACACAACTTAGGATGCGGTCAAAGAGCACAAAAAGTGAACTTCTCCAACTTTTTGATACCTGCAGTATTTCTCAAATCTACTACAAACAGTGCAACTGAGCCAACAAGAAACGCACTTTCAGGAAGAGTAGTGGAGGAGATTGAAGCACGCAAGGTTGAGAAAGCATCAGCTGAAGGATCACATGGTCTCACAGGATTTCAAAAGCAAACATCTTTTGTTGAAAGAAGACCAGAAGCGCCCCTTGATGAGCATTCTGAAGCTGTTGGCAATAACAGTTGTGGCCTTGGAATTCACAGATCCAATACTCAACGTTGTAACCAAACCTCAAGCTCAGGAGCACTTGGAGCAAAGGGAAAAGCTAACACTAACTTGTGTAATGAGCCGTTGCTAGCATCTCCTTCTGTATGCTCTCTTGGAGCCTCAAACGACCCAAACCTTGCTATCAGGTTGCATGAGGACACTGATGACCCAGCATATTTGAGTGATAATGATGAAGAAGCAGAAGATTTACTTCAGCAAACGCCAGATAGGGAGGGTAACAGAATTAAGAGAAGCAGGAATGCGGAGGTTCATAATTTATCTGAAAAGAAGCGAAGAGAAAGAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGATGATGCAATCGACTATCTCAAGACTCTAAAGCTTCAGTTACAGATTATGTCAATGGGTAGTGGTTTATGGCCACTTATGATGTTACCTGCTGCGGCACATCACATAAATGGACCACATTTACCACAGTTAATGGGAGCTGGAATGGGTTTCAGGCCACCACAGCTCCCTATTCCGCTCCCTATTCCACCACTGTCTGCTTCTGCTATCACAAACAACAGATTTCAGATGTTTGGTTTCCCCAACCAAATACCACCCATGCCAATTCCACATGCACCATATTTTCCCATCATTGGAAACTCTTCTACTACACAACCACACTTGGCAACTAGCCCTACAGCTACCACCAACCTAAGGGAACATCTAGCTAATTCTTCAACTCCACAGGTCGCAATTCCCAACAATATTAACTCAGATTTTCATGCGAAGGTCCAAAATGCAGTAAAGCAAGTGCCTAATCAGGTTTCCCTTCACCACCACAATACTAGTCCACTGGCTATCCCTTTCATTTTCCCACAAAGATAG 1707 0.4347 MLDSARSGMTRNSSHLASIYDNDFLELVCENGQVVVRGGSSNRTQKTPSCIGYSISPSRKQTTDEDACIAKGTRLSTLYTLLDHFPPQRDADKSSSNQSNDQESSQSSHTKNSCKLNEEFANLLGPEKDYKPVTTDNVHLCPYSSQQCLPSSPLKKQRTDPGQAPATNSHNLGCGQRAQKVNFSNFLIPAVFLKSTTNSATEPTRNALSGRVVEEIEARKVEKASAEGSHGLTGFQKQTSFVERRPEAPLDEHSEAVGNNSCGLGIHRSNTQRCNQTSSSGALGAKGKANTNLCNEPLLASPSVCSLGASNDPNLAIRLHEDTDDPAYLSDNDEEAEDLLQQTPDREGNRIKRSRNAEVHNLSEKKRRERINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAHHINGPHLPQLMGAGMGFRPPQLPIPLPIPPLSASAITNNRFQMFGFPNQIPPMPIPHAPYFPIIGNSSTTQPHLATSPTATTNLREHLANSSTPQVAIPNNINSDFHAKVQNAVKQVPNQVSLHHHNTSPLAIPFIFPQR* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0603 568 MobiDBLite consensus disorder prediction 340 365 - -
Apr4g0603 568 Pfam Helix-loop-helix DNA-binding domain 359 404 IPR011598 GO:0046983
Apr4g0603 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 419 IPR036638 GO:0046983
Apr4g0603 568 CDD bHLH_AtPIF_like 355 417 - -
Apr4g0603 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Apr4g0603 568 MobiDBLite consensus disorder prediction 147 173 - -
Apr4g0603 568 MobiDBLite consensus disorder prediction 38 63 - -
Apr4g0603 568 MobiDBLite consensus disorder prediction 38 64 - -
Apr4g0603 568 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 552 - -
Apr4g0603 568 Gene3D - 351 412 IPR036638 GO:0046983
Apr4g0603 568 PANTHER TRANSCRIPTION FACTOR PIF3 1 552 IPR044273 GO:0003700|GO:0006355
Apr4g0603 568 MobiDBLite consensus disorder prediction 91 113 - -
Apr4g0603 568 MobiDBLite consensus disorder prediction 85 113 - -
Apr4g0603 568 SMART finulus 361 410 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0603 Apr-Chr4 4986547 4989567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0603 308 497 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 42.995 7.26e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0603 HLH 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0603 K12126 - gmx:100784724 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0603 4 4986547 4989567 Apr8g0019 8 208096 210059 PCT