Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0602 ATGGGCAAAGCCGCTAGTTCTTCCTCTTCTTCCATTAGCAGCAGCAGCAACCACCACCACCACCACTTCATTTCAACCGCATCCTCTCTCACTCACCTCAACACACAAGAACTTCCTACTGATCTTAGCCTTGGTCTCAGCATTTCAGCCACCCAACATGTTGGCTCTTCTATTTCAAGAGGGCAATGGCAACAGAGCCACCCACTTGTGAGCAATTCACAAGCTGCTGAAGTAAATGATTGCAATGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATCCCAATTGGAAGAAAGCTGAATATACTAGCTCACGAAGGCTACTATGAGTTAGTGAGGACACTAGAACACATGTTCGACACTACCATTCTGTGGGGGACAGAGATGAATGGGGTGCAACCGGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTGATGGTTGGGGATGTGCCATGGGAGTAA 483 0.472 MGKAASSSSSSISSSSNHHHHHFISTASSLTHLNTQELPTDLSLGLSISATQHVGSSISRGQWQQSHPLVSNSQAAEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHEGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWE* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0602 160 ProSiteProfiles PB1 domain profile. 86 160 IPR000270 GO:0005515
Apr4g0602 160 SUPERFAMILY CAD & PB1 domains 81 160 - -
Apr4g0602 160 PANTHER AUXIN-INDUCED PROTEIN 3 160 - -
Apr4g0602 160 Pfam AUX/IAA family 73 160 IPR033389 -
Apr4g0602 160 Gene3D - 80 160 - -
Apr4g0602 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 160 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0602 Apr-Chr4 4979706 4980387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0602 14 160 B3 DNA Binding Superfamily AT5G62000 26.667 8.31e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr4g0602 AUX_IAA 3.5e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0602 K14484 - gmx:100783140 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0602 4 4979706 4980387 Apr8g0022 8 231752 233505 PCT