Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0600 ATGGACAACCCACACCACCGTGAATTCACCTTCTTAGACTCCGGCCACCGCATAGATCCTCCAATCAAAGAAATGGATTTCTTCTCTTCATCACGTAAAGACAATAATATTAACAATAACAATGATACTAATGATCATCGTCAGAACCACCTTGATCAGGATCATCACCATGCCAACATCACCAACCGTCCATCGCCCACACGTGTCACTCATCAGCCCATAAACACTGGGCTGAATTTAACGTGTGCAAGTGCTGGAGTTTCAAAGGCAGAAAATGGTGAAAATCATGAAACTGAGCTCATGAGTTCTCTTGAAAGTGAATTGCGGAGACTACAAGAAGAGAATCGCAAGTTGAAAACTGTGCTGGACCAGATCACCAGAGGCTATACCCAACTACAAGCTCAACTGTTCATAGCTTTGCAGAAACAAAAGCCTCATCAGAATATTGAAGGAAATGGGGTGATGTCGGGACAAAAAATAGTGGAGGCAGGTCCATTAACCAAGTTAGACGTGAATGATGCATCGGTTTCGGATGAAAAGACTGATTGTGAGGCTTGTCCTGATGCTTCAGAAGATGTTCTTGACCGCTCCTCATCCCAGAGTTGGGGTTCATCCAAGTTTGAAGAACAGCCAAAAACTCCTCAACCTGATCAGATTCCTTTCAGAAAAGCCAGGGTTTCCGTACGTGCAAGATCAGAAGCTCCCCTGATTAGCGATGGATGTCAGTGGAGAAAATACGGGCAGAAAATGGCCAAAGGTAATCCTTGCCCTCGTGCCTACTATCGATGCACTATGGCAGTAGGATGCCCAGTGCGCAAGCAGGTGCAAAGATGCGCAGAGGACAAGACTGTGTTGATAACAACATACGAAGGCAATCATAACCATCCATTGCCACCAGCTGCCACTGCCATGGCAAGCACCACGTCAGCAGCTGCAGCCATGCTGCTATCAGGTTCAACACCGAGCAAGGAAGCGCAAACAAACTCTGCAGGATATTTCTCTTCACTTCCCTATGCTTCAATGGCAACCCTATCAGCTTCTGCACCATTCCCAACCATCACTCTAGACTTGACTCAAACCCCTAATGCCATGCAACTGCACCGAGTACCAGGCCATAGTGTCACGTTCCCTTTGCCATTGCATGCGCCTTCTGGTCCTCAACTTCTAGGGCATCCCTTGTTGCTCTCACAAAAGCTACCACCTCCAGCATTGCCTCTACTCCAACGACAACCTTCAACTATGGTCGAAACGGTTAGTGCAGCCATAGCTTCGGACCCAAACTTTACTGCAGCTTTGGCGGCAGCGATATCCTCAATCATTGGTGCGCCTAGAGGGCTCAGTGATGGTAATAACAATGTTGGTAACAATGGAAATGCTGTTATTCCTGGTTCACCACAGCTTCCTCAGTCATGCACAACTTTCTCCACCAATTAA 1434 0.4707 MDNPHHREFTFLDSGHRIDPPIKEMDFFSSSRKDNNINNNNDTNDHRQNHLDQDHHHANITNRPSPTRVTHQPINTGLNLTCASAGVSKAENGENHETELMSSLESELRRLQEENRKLKTVLDQITRGYTQLQAQLFIALQKQKPHQNIEGNGVMSGQKIVEAGPLTKLDVNDASVSDEKTDCEACPDASEDVLDRSSSQSWGSSKFEEQPKTPQPDQIPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTPSKEAQTNSAGYFSSLPYASMATLSASAPFPTITLDLTQTPNAMQLHRVPGHSVTFPLPLHAPSGPQLLGHPLLLSQKLPPPALPLLQRQPSTMVETVSAAIASDPNFTAALAAAISSIIGAPRGLSDGNNNVGNNGNAVIPGSPQLPQSCTTFSTN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0600 477 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 477 IPR044810 GO:0003700
Apr4g0600 477 SUPERFAMILY WRKY DNA-binding domain 230 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g0600 477 MobiDBLite consensus disorder prediction 1 30 - -
Apr4g0600 477 MobiDBLite consensus disorder prediction 457 477 - -
Apr4g0600 477 Pfam WRKY DNA -binding domain 239 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g0600 477 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g0600 477 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g0600 477 MobiDBLite consensus disorder prediction 1 50 - -
Apr4g0600 477 Coils Coil 94 128 - -
Apr4g0600 477 MobiDBLite consensus disorder prediction 181 218 - -
Apr4g0600 477 Gene3D WRKY domain 222 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g0600 477 MobiDBLite consensus disorder prediction 193 212 - -
Apr4g0600 477 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 18 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0600 Apr-Chr4 4956759 4962371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0600 74 477 WRKY Transcription Factor Family AT4G01720 44.662 3.68e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr4g0600 WRKY 4.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0600 - - gmx:100817839 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0600 4 4956759 4962371 Apr8g0024 8 242671 246518 PCT