Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0593 ATGTCAGGAAAGGTTATTATCTCTGCGGTCTCTCTGATCCTTGTCGTGGGTGTAGCCCTCGGAGTGGTGGTTGCCGTGAACAAGAACAGCGAAGACCCAGAAATCCAATCTCAACAAAAATCCGTCAGAGTTATATGCCAAGACACCGAAGATCAAAAACTCTGCCATGACACTCTTAGCTCAGTCAAGGGCGTGAATGCCACTGATCCAAAGGCTTACATAGCCGCTGCCGTAAAAGCAACCACTGACAGTGTCATCAAAGCCTTTAACATGAGCGACAGGCTCACAACGGAGTATGGAAAAGATGACAGCACGAAGATGGCCCTCGATGATTGCAAGGATTTGTTGCAATCTGCAATAGAAAGTCTTCAACTCAGCACTGATTTGGTTCACAACAACGACGTGCAAAACATTCATCTTCAATCTGCTGATATCAGAAACTGGCTCAGTGCTGTTATCTCTTACCAACAAGCGTGCATGGATGGTTTTGACCGTGGAACTGATGGTGAGAAGAAGATCAAGGAGCAGTTGAACGAGCAGGGTTTGGACCACGTGGAGAAAATCACTGCCATCACGCTTGATATTGTGACTGATTTGTCCAAGATCCTTGAACAATTCGGGTTGAAGTTGGATCTTAAACCTGCTTCCCGTCGTCTTCTTGGGTCTGAGGCTGATGAAGAAGGATACCCCACTTGGTTCTCTGCTGCTGATCGTAAGCTTTTGGCTCAGCTTCAAGGCAAGGGATGGAGATCACGAGTGAAGCCCAACGTTGTTGTTGCCAAGGACGGAAGTGGTCAATTCAAAACCATTGCAGAAGCTATTGCTTCATACCCTAAGGGTTTCTCTGGTCCTAGATACGTTATATATGTTAAGGCTGGTGTGTATGATGAGTACATCACCGTTCCCAAGCAAGCAGTGAACGTTCTCATGTATGGTGATGGCCCTCTAAAGACCATTGTCACTGGTCACAAGAGCTTTGCTGGCGGCATCACGACCATGCAAACTGCCACCTTCGCCAACACTGCAACAGGATTCATCGCAAAGGCAATGACATTTGAGAACACAGCTGGACCTGATGGTCACCAAGCAGTGGCACTTAGGAACCAAGGAGACGCGTCTGCTTTCGTGGGTTGCCACATATTGGGTTACCAAGACACCTTGTACGCTCAAGCCAACAGGCAATTCTACCGCAACTGCGTCATCTCTGGCACCATTGACTTCATCTTTGGCACATCCCCAGTAATAATCCAACACTCTGTGATCATTGTGAGGAAGCCAAACGACAACCAATTCAACACAGTGACCGCAGACGGCACAAAGACAAAGAAAATGAACACTGGCATCGTGATCCAGGACTGCCAGATCGTCCCAGAAGCAGCACTTGTCCCTGTGAGGTTTCAGATTAAATCCTACTTGGGAAGGCCATGGAAGGAGCTCTCAACGACCGTTGTCATGGAATCCACTATCGGAGACTTCATTCATCCAGATGGGTGGTTCCCTTGGGCCGGTAATGCTTTCCTTGACACCTTGTACTATGCTGAGTACAACAACGATGGTCCTGGTGCCAATGTTAGCGGAAGGGTCAAGTGGAAGGGTTACCGTGGTCTCATCAGCCGTGCCGAAGCTGAACAATTCACTGCTGGCAAGCTCCTCCAGGCTGGACCTGGTTCTGGAGTTGATTGGATCAAGAGTCTTCATGTTCCTCACGCCCTTGGCTTCGTCAAAGCTTAA 1731 0.4841 MSGKVIISAVSLILVVGVALGVVVAVNKNSEDPEIQSQQKSVRVICQDTEDQKLCHDTLSSVKGVNATDPKAYIAAAVKATTDSVIKAFNMSDRLTTEYGKDDSTKMALDDCKDLLQSAIESLQLSTDLVHNNDVQNIHLQSADIRNWLSAVISYQQACMDGFDRGTDGEKKIKEQLNEQGLDHVEKITAITLDIVTDLSKILEQFGLKLDLKPASRRLLGSEADEEGYPTWFSAADRKLLAQLQGKGWRSRVKPNVVVAKDGSGQFKTIAEAIASYPKGFSGPRYVIYVKAGVYDEYITVPKQAVNVLMYGDGPLKTIVTGHKSFAGGITTMQTATFANTATGFIAKAMTFENTAGPDGHQAVALRNQGDASAFVGCHILGYQDTLYAQANRQFYRNCVISGTIDFIFGTSPVIIQHSVIIVRKPNDNQFNTVTADGTKTKKMNTGIVIQDCQIVPEAALVPVRFQIKSYLGRPWKELSTTVVMESTIGDFIHPDGWFPWAGNAFLDTLYYAEYNNDGPGANVSGRVKWKGYRGLISRAEAEQFTAGKLLQAGPGSGVDWIKSLHVPHALGFVKA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0593 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Apr4g0593 576 SMART PMEI_2 37 195 IPR006501 GO:0004857
Apr4g0593 576 Pfam Plant invertase/pectin methylesterase inhibitor 41 195 IPR006501 GO:0004857
Apr4g0593 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 197 IPR006501 GO:0004857
Apr4g0593 576 CDD PMEI-like_3 45 201 - -
Apr4g0593 576 PANTHER PECTINESTERASE 3 574 - -
Apr4g0593 576 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Apr4g0593 576 SUPERFAMILY Pectin lyase-like 252 554 IPR011050 -
Apr4g0593 576 PANTHER PECTINESTERASE 3 574 - -
Apr4g0593 576 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Apr4g0593 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 200 IPR035513 -
Apr4g0593 576 Gene3D - 250 573 IPR012334 -
Apr4g0593 576 Pfam Pectinesterase 256 552 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0593 Apr-Chr4 4910861 4912715 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0593 1 573 Carbohydrate Esterase AT2G47030 40.558 5.05e-140 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0593 K01051 - gmx:100815015 871.307