Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0590 ATGTCAGGAAAGGTTATTATCTCTGCGGTCTCTCTGATCCTTGTGGTGGGTGTAGCCCTCGGCGTGGTGGTTGCCGTGAACAAGAAGAGCGAAGACCCAGAAATCCAGTCTCAACAAAAATCCGTCAGAGTTATATGCCAAGACACCGAAGATCAAAAACTCTGCCATGACACTCTTAGCTCAGTCAAGGGCGTGAATGCCACTGATCCAAAGGCTTACATAGCCGCTGCCGTAAAAGCAACCACTGACAGTGTCATCAAAGCCTTTAACATGAGCGACAGGCTCACAACGGAGTATGGAAAAGATGACAGCACGAAGATGGCCCTCGATGATTGCAAGGATTTGTTGCAATCTGCAATAGAAAGTCTTCAACTCAGCACTGATTTGGTTCACAACAACGACGTGCAAAACATTCATCTTCAATCTGCTGATTTCAGAAACTGGCTCAGTGCTGTTATCTCGTACCAACAAGCGTGCATGGATGGTTTTGACCGTGGAACTGATGGTGAGAAGAAGATCAAGGAGCAGTTGAACGAGCAGGGTTTGGACCACGTGCAGAAAATCACTGCCATCACGCTTGATATTGTGACTGATTTGTCCAAGATCCTTGAACAATTCGGGTTGAAGTTGGATCTTAAACCCGCTTCCCGTCGCCTTCTTGGGTCTGAGGCTGATGAGGAAGGATACCCTACTTGGTTCCCTGCTGCTGATCGTAAGCTTTTGGCTCAGCTTCAAGGTAAGGGATGGAGATCACGAGTGAAGCCCAATGTTGTTGTTGCCAAGGACGGAAGTGGTCAATTCAAAACCATTGCAGAAGCTATAGCTTCATACCCTAAGGGTTTCTCTGGTCCTAGATACGTTATCTATGTTAAGGCTGGTGTGTATGATGAGTACATCACCGTTCCCAAGCAAGCAGTGAACGTTCTCATGTACGGTGATGGCCCTCTAAAGACCATTGTCACTGGTCACAAGAGCTTTGCTGGCGGCATCACGACCATGCAAACTGCCACCTTCGCCAACACTGCAACAGGATTCATCGCAAAGGCAATGACATTTGAGAACACAGCTGGACCTGATGGTCACCAAGCAGTGGCACTTAGGAACCAAGGAGACGCGTCTGCTTTCGTGGGTTGCCACATATTGGGTTACCAAGACACCTTGTACGCTCAAGCCAACAGGCAATTCTACCGCAACTGCGTCATCTCTGGCACCATTGACTTCATCTTTGGCACATCCCCAGTAATAATCCAACACTCTGTGATCATTGTGAGGAAGCCAAACGACAACCAATTCAACACAGTGACCGCAGACGGCACAAAGACGAAGAAAATGAACACTGGCATCGTGATCCAAGACTGCCAGATCGTCCCAGAAGCAGCACTTTTCCCTGTGAGGTTTCAGATTAAATCCTACTTGGGAAGGCCATGGAAGGAGCTCTCAACGACCGTTGTCATGGAATCCACTATCGGAGACTTCATTCATCCAGATGGGTGGTTCCCTTGGGCCGGTAATGCTTTCCTTGACACCTTGTACTATGCTGAGTACAACAACGATGGTCCTGGTGCCAATGTTAGCGGAAGGGTCAAGTGGAAGGGTTACCGTGGTCTCATCAGCCGTGCCGAAGCTGAACAATTCACTGCTGGCAAGTTCCTCCAGGCTGGACCTGGTTCTGGAGTTGATTGGATCAAGAGTCTTCATGTTCCTCACGCCCTTGGCTTCGTCAAAGCTTAA 1731 0.4864 MSGKVIISAVSLILVVGVALGVVVAVNKKSEDPEIQSQQKSVRVICQDTEDQKLCHDTLSSVKGVNATDPKAYIAAAVKATTDSVIKAFNMSDRLTTEYGKDDSTKMALDDCKDLLQSAIESLQLSTDLVHNNDVQNIHLQSADFRNWLSAVISYQQACMDGFDRGTDGEKKIKEQLNEQGLDHVQKITAITLDIVTDLSKILEQFGLKLDLKPASRRLLGSEADEEGYPTWFPAADRKLLAQLQGKGWRSRVKPNVVVAKDGSGQFKTIAEAIASYPKGFSGPRYVIYVKAGVYDEYITVPKQAVNVLMYGDGPLKTIVTGHKSFAGGITTMQTATFANTATGFIAKAMTFENTAGPDGHQAVALRNQGDASAFVGCHILGYQDTLYAQANRQFYRNCVISGTIDFIFGTSPVIIQHSVIIVRKPNDNQFNTVTADGTKTKKMNTGIVIQDCQIVPEAALFPVRFQIKSYLGRPWKELSTTVVMESTIGDFIHPDGWFPWAGNAFLDTLYYAEYNNDGPGANVSGRVKWKGYRGLISRAEAEQFTAGKFLQAGPGSGVDWIKSLHVPHALGFVKA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0590 576 SMART PMEI_2 37 195 IPR006501 GO:0004857
Apr4g0590 576 CDD PMEI-like_3 45 201 - -
Apr4g0590 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 200 IPR035513 -
Apr4g0590 576 Gene3D - 250 573 IPR012334 -
Apr4g0590 576 PANTHER PECTINESTERASE 3 574 - -
Apr4g0590 576 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Apr4g0590 576 PANTHER PECTINESTERASE 3 574 - -
Apr4g0590 576 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Apr4g0590 576 Pfam Plant invertase/pectin methylesterase inhibitor 41 195 IPR006501 GO:0004857
Apr4g0590 576 SUPERFAMILY Pectin lyase-like 252 555 IPR011050 -
Apr4g0590 576 Pfam Pectinesterase 256 553 IPR000070 GO:0030599|GO:0042545
Apr4g0590 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Apr4g0590 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0590 Apr-Chr4 4886026 4887880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0590 1 573 Carbohydrate Esterase AT2G47030 40.230 2.12e-138 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0590 K01051 - gmx:100815015 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0590 4 4886026 4887880 Apr8g0034 8 312641 315589 PCT
Apr8g0033 8 308093 309909 Apr4g0590 4 4886026 4887880 PCT