Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0584 ATGGTGCAAAACTCGCGCAACGAAAGCGGCGTGTACGCGGCGGCGAAGATTTCAGTGTGGTGGGACATCGAAAAATGCCCCGTTCCCAAAGGGCACGACGCAAACTCCATCGCCAATAACATAGCCGCCGCTCTCGTCAACATCAACTACAACGGCCCTCTCTCCATTTCCGCCTACGGTGACACCAACCGCATTCCCTCTCCAGTCCAACGCGCTCTCTCCAGTACCGGCATTGCCCTCAACCACGTTCCCTCCGGTTCCAACTCTTATTCATCCTTTTCAGGTTGCAAAGATATGAAGATTCTCGTCGATATGCTGTTCTGGGCCGTAGACAATCCCGCCCCTGCTAACTACTTAATGATTTCCGGCGACAGAGACTTCTCCATGGCTCTCCACCAACTCAGCCTCCGAAGATACAACATTCTCCTCGCCCAACCGTTTCAAGCTTCTGCGTCGCTCGTCGCCGCCGCTAAAGTCGTTTGGCTGTGGACCACTCTTTCTGCCGGTGGCGCCCCTCTTTACATTGCTGATTCTGATTCATCTTCCGGTAAAATTAACCCTACTCCTATTTTCGAACCCGTTCAACTCAAATCTAAACCTAAATATGTTAGGAAAATCACGAACGTGCCAGAAAGTCCTACAAAATGTGTGGCTGATGATGATGATAATGCGAAACCGCTAACGAAGCTGATTTTCAAAGCACCTCATGAGTTTTTTTCTTGTAACGACGTGATAGTTCCGAATACCGTAGTTCAGAGTTTGGCGCCACCTTCTGAGTATGTGCGAGGTCTTGTTGATGTTGTTATGAGAGCCTTGAACACTCTTAAGGTTGAGATGGTTTTGTCCACTGAGGGAAATATAACTGATTGCATTCGCTATGGGGATTATAGATATCAGAGAATTGATGTTAGGAAGGCTTTGGATTTTGCAATAGAGCAACATGGGGTGGTGAAGAGAACCTTCGGTGCACTGCATTTGTATGTTGGTAAGGATGGGGGGCTCTGGAAGTTTGTGAACCATGTTGGTGGTCAGCCCAGTGATTTCCCAGAAGCCACGTGGGATAGAATAAAGCAATTTATTGCTTCATCTTCTGGAAGATCGTCAATTTTGGCTTCTCGTTGCAGATATGAAGCGTCTTTGATTATAAGGAGATTGTGCCTTGGAGAGTTTTTATTAGGGGATGTGCTTCGAATTCTGGAGATGGTAATCACCGTCAAGAAATGGATTATTCATCGTCATTCCGGATGGCAGCCTATTACCATTACGCTTATGGAGACTAAAGGTGATACACTGTAA 1296 0.4707 MVQNSRNESGVYAAAKISVWWDIEKCPVPKGHDANSIANNIAAALVNINYNGPLSISAYGDTNRIPSPVQRALSSTGIALNHVPSGSNSYSSFSGCKDMKILVDMLFWAVDNPAPANYLMISGDRDFSMALHQLSLRRYNILLAQPFQASASLVAAAKVVWLWTTLSAGGAPLYIADSDSSSGKINPTPIFEPVQLKSKPKYVRKITNVPESPTKCVADDDDNAKPLTKLIFKAPHEFFSCNDVIVPNTVVQSLAPPSEYVRGLVDVVMRALNTLKVEMVLSTEGNITDCIRYGDYRYQRIDVRKALDFAIEQHGVVKRTFGALHLYVGKDGGLWKFVNHVGGQPSDFPEATWDRIKQFIASSSGRSSILASRCRYEASLIIRRLCLGEFLLGDVLRILEMVITVKKWIIHRHSGWQPITITLMETKGDTL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0584 431 PANTHER LIMKAIN B LKAP 10 195 IPR024768 GO:0005777|GO:0010468|GO:1903231
Apr4g0584 431 PANTHER LIMKAIN B LKAP 270 415 IPR024768 GO:0005777|GO:0010468|GO:1903231
Apr4g0584 431 Pfam NYN domain 16 158 IPR021139 GO:0004540
Apr4g0584 431 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 270 415 - -
Apr4g0584 431 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 10 195 - -
Apr4g0584 431 CDD PIN_limkain_b1_N_like 16 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0584 Apr-Chr4 4853720 4855090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0584 12 178 C2H2 Transcription Factor Family AT5G61190 64.671 2.64e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0584 - K17573 aprc:113861052 836.254