Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0581 ATGGAAGCTAGATTTGGGGCAGAAGCTTTTCATTTGTACGGTTCCTCTGATTTGCGGGGTGTGGGGAAGAGGACTGTTGAGTGGGATTTGAATGAATGGAAATGGGATGGTGATCTTTTCGTTGCTAGGCCTTTGAGTCCAGTGCCGGAGCATAGGCAATTTTTCCCTGTGCCTGGGGGTTCCTCCAACTCCAATAGTTCATCTTCGTGCTCTGATGACGTAGATCTCGGGATTCGACGGGGGAACAAGGAAGGGGAGAGGAAGAGGAGGGTTGTTGTGGTGGAGGATGAAACAGGGTTGAATGAGGAAGCGGGTAGTCTTAGCTTAAAGATTGGTGGTGGGCGGGGTGTTGGTGGTAGTACTGTTGCTACTCAAATTGCAAGCTGGGAAGGAACCAATGGGAAGAAAAGCAGAGTAGCCGGGGGTACTTCGAATCGAGCTATTTGTCAGGTGGAGGACTGTGGCACAGATCTCAGCAATGCCAAAGATTATCACAGACGTCATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAAGGCCCTTGTGGGGAATGCAATGCAGCGGTTCTGCCAACAGTGTAGTAGGTTTCACATGCTTCAAGAGTTTGACGAAGGAAAGAGAAGCTGCAGAAGGCGTTTGGCTGGCCACAATAAACGAAGGAGGAAAACAAATCAAGCTGACAGGTCAGATCAGAACACAGATCAGGATCTGCTGACTCATCTTTTAAAGAGTCTTGCTAGTCAGAATGGTGAACAAGGGAGCAAGAACTTGTCAAAACTTTTACGGGAACCAGAGAATTTGTTGAAAGAAGGGAGGTCATCGGGGAAGTCCGAGGTGGTTTCTACTTTATTCTCAAATGGTTCTCAAGGCTCTCCAACTACTACAAAACAGAATCAATCAGTTTCTATTAGTGAAATTCAGCATCAAGTGATGCACGCACATGATGCTAGGGCTGCTGATCAGCAAACAGTGTCTTCTACAAAGCCCAGTGTCTCAAATAGCCCTCCAGCTTACTCAGAAGCCAGAGACAGTACTGCTGGACAGACCAAGATGAATAACTTTGATCTGAATGACATTTATGTTGACTCAGATGATGGCATAGAAGACATAGAAAGGTTGCCTGTGTCTGGAAATCTGGGTACTACTAGCTCTCTTGATTACCCATGGATGCAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCCAGTGGAGAAGCTCAGAGCCGCACAGACCGCATTGTTTTCAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTAGATTGGTTATCACACAGTCCTACTGATATTGAGGGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTGTGTGGGAGGAACTATGCTATGATTTGGCATCCAGTTTGAATAGACTTCTGGATGTCTCGGATGATGATTTTTGGAGGACTGGATGGGTTCATATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATAGATGCATCCTTGCCTTCCAGAAGTAATTATAGTAAGATTCTGAGTGTTAGTCCAATTGCTGTACCGGCATCAAAGACAGCTCAATTTTCTGTTAAGGGAATCAACCTGATTCGCCCTGCCACTAGGTTATTATGTGCTATAGAAGGGAGTTATCTAGTTTGTGAAGATGCTTGTGAGTCTATGGATCAATGCTCCAAAGATCTTGATGAGTTAGAGTGCATCCAGTTTTCATGCTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGATCAGGGTTTGAGCAGCAGCTTTTTTCCTTTTATAGTTGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTACTAGAATTAAGTGATACTGATCCAGATATTGAAGGGGATGGAAGAATAAAGGCCAGAAACCAAGCTATGGATTTTATACATGAAATGGGTTGGCTTCTCCACAGAAGCCAAATGAAATCTAGGATGGTTCACTTGAACTCTGGCGCAGATCTGTTCCCATTAAACCGATTCAAGTGGCTCATGGAGTTCTCTGTGGACCATGATTGGTGTGCAGTAGTTAAAAAACTATTGAACCTTCTGTTTGATGGAACTGTGAGTACAGGAGATCACCCTTCCCTGTATCTTGCACTTTCAGAGCTGGGTGTCCTTCACAGAGCTGTACGGAGAAATAGCAGGCAGTTGGTGGAGCTGCTTTTGAGATTTGTTCCTGAGAATATTTCTGATAAACTAGGAGCTGAAGACACGGTACTTGTTGATGAAGAGAATCAAAGCTTCTTGTTTACACCTGATGTTATTGGTCCTGCTGGCTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCTGAAGATGTTCTGGATGCTTTGACTAACGATCCTTGCATGGTTGGAATTGAAGCATGGAAGAGTGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGTTTACGTGGCCATTATACTTACATTCACTTGGTCCAAAAGAAAATCAACAAAAAACAGGGAGGAACTCATGTGGTGGTTGAGATTCCGAGCAATCTAACAGGGTTCAGTACAAACCAGAAGCAAAATGAATCGTCCACTAGCTTTGAGATTGGGAAGACTGATGTCAAATATGTCCAAAAGCATTGCAAACTCTGTGATCATAAGTTGTCTTGTAGAACTGCTGTAGGCAAGTCTTTGGTATACAAACCTGCAATGCTGTCAATGGTAGCCATAGCAGCAGTCTGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCCGAAGTTCTGTATGTATTCCGTCCTTTCAGGTGGGAATCGTTGGAGTTCGGAACAAGCTGA 2931 0.4463 MEARFGAEAFHLYGSSDLRGVGKRTVEWDLNEWKWDGDLFVARPLSPVPEHRQFFPVPGGSSNSNSSSSCSDDVDLGIRRGNKEGERKRRVVVVEDETGLNEEAGSLSLKIGGGRGVGGSTVATQIASWEGTNGKKSRVAGGTSNRAICQVEDCGTDLSNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNQADRSDQNTDQDLLTHLLKSLASQNGEQGSKNLSKLLREPENLLKEGRSSGKSEVVSTLFSNGSQGSPTTTKQNQSVSISEIQHQVMHAHDARAADQQTVSSTKPSVSNSPPAYSEARDSTAGQTKMNNFDLNDIYVDSDDGIEDIERLPVSGNLGTTSSLDYPWMQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIEGYIRPGCIVLTIYLRQAEAVWEELCYDLASSLNRLLDVSDDDFWRTGWVHIRVQHQIAFIFNGQVVIDASLPSRSNYSKILSVSPIAVPASKTAQFSVKGINLIRPATRLLCAIEGSYLVCEDACESMDQCSKDLDELECIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLELSDTDPDIEGDGRIKARNQAMDFIHEMGWLLHRSQMKSRMVHLNSGADLFPLNRFKWLMEFSVDHDWCAVVKKLLNLLFDGTVSTGDHPSLYLALSELGVLHRAVRRNSRQLVELLLRFVPENISDKLGAEDTVLVDEENQSFLFTPDVIGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKKQGGTHVVVEIPSNLTGFSTNQKQNESSTSFEIGKTDVKYVQKHCKLCDHKLSCRTAVGKSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLEFGTS* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0581 976 SUPERFAMILY Ankyrin repeat 746 862 IPR036770 -
Apr4g0581 976 MobiDBLite consensus disorder prediction 213 234 - -
Apr4g0581 976 MobiDBLite consensus disorder prediction 275 307 - -
Apr4g0581 976 Pfam SBP domain 149 222 IPR004333 GO:0003677
Apr4g0581 976 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Apr4g0581 976 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 225 IPR044817 GO:0003677
Apr4g0581 976 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 225 975 IPR044817 GO:0003677
Apr4g0581 976 Gene3D - 140 210 IPR036893 GO:0003677|GO:0005634
Apr4g0581 976 MobiDBLite consensus disorder prediction 383 423 - -
Apr4g0581 976 MobiDBLite consensus disorder prediction 54 87 - -
Apr4g0581 976 MobiDBLite consensus disorder prediction 269 350 - -
Apr4g0581 976 MobiDBLite consensus disorder prediction 319 350 - -
Apr4g0581 976 MobiDBLite consensus disorder prediction 57 73 - -
Apr4g0581 976 SUPERFAMILY SBT domain 147 225 IPR036893 GO:0003677|GO:0005634
Apr4g0581 976 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 16 225 - -
Apr4g0581 976 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 225 975 - -
Apr4g0581 976 Gene3D - 711 869 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0581 Apr-Chr4 4819721 4827332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0581 1 976 SBP-box Gene Family AT3G60030 53.756 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr4g0581 SBP 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0581 - - gmx:100809806 1553.88