Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0578 ATGGATGACTGTTGTGCCGTCTGCGCTGAGCCTTTGGAATGGGTTGCGTATGGACCCTGTTTGCACCGGGATGTGTGCTCCACGTGCGTCGCTCGCCTCCGTTTCATCTGCGATGATCGTCGTTGCTGCATCTGCAAGACCGAATGCAACATCGTTTTCGTTACCAAGGCTCTAGGTGATTATACGAGGATGATAAATGACTTTTCGGCCCTTCCTGTGGAGGTAAGGGAGGGCAAGGTTGGATCATACTGGTACCACGAGGATACAAATGGATTTTTCGATGATGTGGACCATTACAAGATGATCAAGGCCATGTGCAGGCTTTCTTGCAGTGTATGTGACAAGATGGAGGAGCAACCACAGGATGCATCAAGGAGGCGAGCAAAGTTTAGGAATATAGGGCAGCTGAAGGGTCACTTATTCCATCGTCATAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACTAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAATGAGAGTGAGAGGGGTGGTTTTATGGGGCATCCCATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAACTATACACGCATATGTCCACGGAACATTACACTTGTCATATATGCCAAAGGCAGCATCCTGGGCACTATGAATACTATAAGAATTATGATGACCTAGAGATCCACTTTCGTCAAGAGCACTTTTTATGTGAAGATGAGTCTTGCCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGTATGTCACGATCAAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGATCAACGCCGCGGAAGAGGTCGTACATTTCGTCGTGATTTTTCTGAAAATCAACTTTCTATGGCCATAGAGGCCAGTTTGGAGACAGCTAATGCAGAGCAAACGTTTCGTGATCTCCCGACATCAAGTACTGGGCAAGTTGCTGTTGATGATGAGAATGCTGATATTGATTCTATCATTCAGCCGTTTGAATCATTAGCTACAGCAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCAAAACTCTAGGAGTGCACCTCTGGAAGATTCTTCCTTTCCGCCACTTCCCATAGCTTCCAGCAATGGTCAGCAAAGGTCCAACCATGAATTGGAGGGTTCCGCTGGTAACACTATGGCTGCACGTTTACGCCGGCATGGCAAGAGAAATGTTTCTGTTATTAATGTTGGGAATGCTTGGCCAGCAGCAGGTCGTGGACCAGTACAATCATCAAGTAATCCTTCACAATCTAAACTGTCAATAAACAACGCTCTTGGAGGGTCTCGTAACTCTGGTCAGGTGAAGACAGTAATTAACAGTGGACTTCCACCATCAACTTATGCTGGTTCTATTCAGGCTACACAGAGAACTGCTGGTTCATTGAGGGACGCACGTGACAATGGCAGAATTGTTCACTCTGCGTCTGCTCCAAATCTCGTTGAGAGTAACTCTGTTGAAGTTTCAATTTCAGATTTTCCTCCAGTTTCTTCTGCACAGGTGAGTAAGTTACCTGCGAGCAGCCAATCTTTATTGAACGTGGAAAATGTTCAGTCTGCAAACAAGACCTTGGTTGAAAAGATCCGAGGTGCGCTTGATTTTGATGAAGAAAGATACACTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATACCTTGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTGGAATTGGCAAGACTGTGTCCAGATACTCAAAAGCAGAAAGAGCTTATTGATGCTTACAACACTAGTTTGCAAAAGAATGCTTTACAAGAAAATGGCGGGGTTCGAGGTAGCAGTAGCAACCATCGCAAAAACAGTAACGTAAACAAGAAAGGCAAAGGTAAGTCTGTAGATGGTAGGGGGAGTAACTCGACCGAGAAATTAGCAGATAACTTTCTAAGCACTGTACATCAACTACAGGCAGGTTATAAATCTTCAGAAGAGAAGGTGGAAGTGCTATCAAGGGGTGATTACCGCAGTGACAAAGGCAAATTAACAATCGAGCAACAGATGGATACAAACTCAGGTAGTCAACCCGTGCTAAAGCTTAGTGGGCAGACTGAAACATCAAATGACAGTTTATCTAATCAAAATAGAGATGATGGGGGTGGTGGGAACAAACAACGCAAGAAAACTTCCAAGTTCCTGAGAGTGCGTCTTGGTGACGGTTCTGCTTCGGCTCTTCTTGATCCTGAATCAAATTCTGGAACAATTGATAGTTCAGAAGGTAACAAAAATGACTCCGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAATGGGGGAGGTCATAAACTCTTCTCTTAG 2487 0.4451 MDDCCAVCAEPLEWVAYGPCLHRDVCSTCVARLRFICDDRRCCICKTECNIVFVTKALGDYTRMINDFSALPVEVREGKVGSYWYHEDTNGFFDDVDHYKMIKAMCRLSCSVCDKMEEQPQDASRRRAKFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGNESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGHYEYYKNYDDLEIHFRQEHFLCEDESCLAKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHDQRRGRGRTFRRDFSENQLSMAIEASLETANAEQTFRDLPTSSTGQVAVDDENADIDSIIQPFESLATAGSESSARYLQALGQNSRSAPLEDSSFPPLPIASSNGQQRSNHELEGSAGNTMAARLRRHGKRNVSVINVGNAWPAAGRGPVQSSSNPSQSKLSINNALGGSRNSGQVKTVINSGLPPSTYAGSIQATQRTAGSLRDARDNGRIVHSASAPNLVESNSVEVSISDFPPVSSAQVSKLPASSQSLLNVENVQSANKTLVEKIRGALDFDEERYTIFKDISAQYRQGTIDTGTYLDYVQQFGLSHLVLELARLCPDTQKQKELIDAYNTSLQKNALQENGGVRGSSSNHRKNSNVNKKGKGKSVDGRGSNSTEKLADNFLSTVHQLQAGYKSSEEKVEVLSRGDYRSDKGKLTIEQQMDTNSGSQPVLKLSGQTETSNDSLSNQNRDDGGGGNKQRKKTSKFLRVRLGDGSASALLDPESNSGTIDSSEGNKNDSGGGPPVRGVWRNGGGHKLFS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0578 828 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Apr4g0578 828 CDD RING-HC_ZNF598 5 46 IPR041888 -
Apr4g0578 828 MobiDBLite consensus disorder prediction 454 478 - -
Apr4g0578 828 PANTHER EBR1 1 827 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 727 762 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 650 665 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 788 807 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 448 478 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 650 686 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 721 828 - -
Apr4g0578 828 MobiDBLite consensus disorder prediction 393 422 - -
Apr4g0578 828 PANTHER ZINC FINGER PROTEIN 598 1 827 IPR044288 GO:0061630|GO:0072344
Apr4g0578 828 SMART c2h2final6 108 144 IPR013087 -
Apr4g0578 828 SMART c2h2final6 220 250 IPR013087 -
Apr4g0578 828 SMART c2h2final6 251 280 IPR013087 -
Apr4g0578 828 SMART c2h2final6 196 219 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0578 1 828 C2H2 Transcription Factor Family AT3G62240 53.576 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0578 K22381 - gmx:100799878 1445.25