Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0566 ATGGATTATGCTAAGGTGAAGAAAGGAGGGTCCATAGAACAGGTGCAGCAGAGTGGAGAGGACGAGACAAGCATCAGAAAAGGTCCATGGAGCATTGAAGAGGACACCATTCTCACAAACTATGTCGCTACCCACGGTGACGGTCGCTGGAATTCCGTCGCTCGCTCTTCAGGCCTAAAGAGATCGGGGAAAAGTTGCAGGTTAAGATGGCTAAACTACTTGCGTCCTGATGTTCGTCGTGGGAACATAACACTCCAAGAACAAATCACCATTCTTGACCTCCATTCTCGGTGGGGTAATAGGTGGTCGAAAATTGCCCAGCACTTGCCGGGTAGAACAGACAACGAAATAAAGAATTATTGGAGAACACGAGTGATTAAGCAAGCAAAGCAACTAAAGTGTGACGTCGACAGTAAACAGTTCAAAGATGCTTTGCGTTACGTATGGTTACCCCGTTTGATTGAGCGGATTCAGCCACCCTCTCAAACACACCCAAGCCCAAGAGTACACGGGTCAGAAAGTTCTGGTTCGGGAACAGAGTGGGTGAAGCAGAGTTCATCGGGTGTGGAAGTGGATCACAACACAAGTTTGAATGCGTTTGGTGGCGGTGGCGGTGGCGAAATAATGGAGAATTTGTGGGAGGATGAGAATATATGGTTTAATATAAAA 669 0.4723 MDYAKVKKGGSIEQVQQSGEDETSIRKGPWSIEEDTILTNYVATHGDGRWNSVARSSGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVDSKQFKDALRYVWLPRLIERIQPPSQTHPSPRVHGSESSGSGTEWVKQSSSGVEVDHNTSLNAFGGGGGGEIMENLWEDENIWFNIK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0566 223 MobiDBLite consensus disorder prediction 158 202 - -
Apr4g0566 223 MobiDBLite consensus disorder prediction 159 194 - -
Apr4g0566 223 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Apr4g0566 223 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Apr4g0566 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Apr4g0566 223 Gene3D - 84 125 - -
Apr4g0566 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 74 IPR017930 -
Apr4g0566 223 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 168 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr4g0566 223 Gene3D - 27 79 - -
Apr4g0566 223 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Apr4g0566 223 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 15 168 - -
Apr4g0566 223 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Apr4g0566 223 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Apr4g0566 223 MobiDBLite consensus disorder prediction 1 26 - -
Apr4g0566 223 CDD SANT 84 123 IPR001005 -
Apr4g0566 223 SMART sant 26 76 IPR001005 -
Apr4g0566 223 SMART sant 79 127 IPR001005 -
Apr4g0566 223 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0566 Apr-Chr4 4692815 4695892 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0566 20 157 MYB Transcription Factor Family AT2G47190 75.362 1.72e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0566 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0566 K09422 - gmx:100797220 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0566 4 4692815 4695892 Apr8g0051 8 414435 420384 PCT