Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0564 ATGGAGAGTGTTGACATGATTAGAAGCTTATCAGAAACATATGCAAGTGAAGAAGAGATGTCAATAACGAAAGGTCCATGGACCGAGGAAGAGGATTCTGTTCTCTTCAACTACATCACTGTCCACGGCGAAGGTCACTGGAACTCCGTTGCTCGCTCCACAGGTCTAAAGAGAACGGGTAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCTAGCGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCTTGATTCTTGATCTCCATTCCCGCTGGGGCAACCGATGGTCGAAAATAGCTGAACATCTACCAGGCAGAACAGACAACGAGATAAAAAATTATTGGAGAACGAGAGTGGTGAAGCAGGCTAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGAGATACCATGCGTTTTGTGTGGATGCCACGTATGCTAGAGAGGATCCAGGCTCAGGCCTCGTCGGGCCAGGCCCAGCCCACCTCAATTTGCAACACTCAAGCCCACAGCGACCCTTGTGGAGTCAACGCCAGTTTGTTGTCAGAAGTCAACGCCCCTTCTCTCTCTGACTCTGGTGCATCTTATAATAATAGGGAAGAGGAAGGTGGCACCCTATCCCTATGGCAGAAGAGAAACTATTCAGACATATCATGCAATGGTTTCGGTGGTTCAGACTTATGGACGGATGAAAATATTTGCTTTTTGCAACAACAGCTAGCTGATGACTTGTAA 747 0.4685 MESVDMIRSLSETYASEEEMSITKGPWTEEEDSVLFNYITVHGEGHWNSVARSTGLKRTGKSCRLRWLNYLRPSVRRGNITLQEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTMRFVWMPRMLERIQAQASSGQAQPTSICNTQAHSDPCGVNASLLSEVNAPSLSDSGASYNNREEEGGTLSLWQKRNYSDISCNGFGGSDLWTDENICFLQQQLADDL* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0564 248 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Apr4g0564 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Apr4g0564 248 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Apr4g0564 248 CDD SANT 81 120 IPR001005 -
Apr4g0564 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Apr4g0564 248 SMART sant 76 124 IPR001005 -
Apr4g0564 248 SMART sant 23 73 IPR001005 -
Apr4g0564 248 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Apr4g0564 248 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Apr4g0564 248 Gene3D - 23 76 - -
Apr4g0564 248 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 11 174 - -
Apr4g0564 248 CDD SANT 26 71 IPR001005 -
Apr4g0564 248 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 174 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr4g0564 248 Gene3D - 81 122 - -
Apr4g0564 248 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0564 Apr-Chr4 4673815 4674880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0564 1 247 MYB Transcription Factor Family AT2G47190 49.815 1.57e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0564 Myb_DNA-binding 5.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0564 K09422 - gmx:100819467 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0564 4 4673815 4674880 Apr8g0052 8 441705 442732 PCT