Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0556 CGTCAAAGTAAGTGTAATCGAGAGTTGACGAAGCTGGAGAATCAGAAGGAGCACGCAGAACAAAGGGTCAATTTCAACGGAAACCCTACAAACCCTTATCCCCACGACAATGCCAACGCCTTTAATCACTTCCACCCCATACCTCCCGTTGTTGATTCTCCATACGCTCTTAACCATTCCGTGCCTCGCCCTCCCCGCAAACGCCCCTGGCAAGGAACTTCTCCAGATCAAGTGGACGGTGGATGTCACGTAAAAGTTTATGTTGCGCCAGTTCCAAGAACCGCAACAGAGGCTGATATTCGCCCTGTGTTTGAAGGACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGATAGGAGAACTGGCATACGGCAAGGAAGCTGTTTTGTGAAATATGCAACATTAGATGAAGCTGACAGGGCTATTAAGGCTTTAAGCAATCAATTTACATTTCCTGGGGAATCATGTCCTGTTGTTGTAAGATTTGCTGATCGAGAACTTGAACGTCTGGGGGTTCGAGGGTTCTGCCGTAACTTGGAAAAGAAAGATCCTTTAGAAGAGGTGGCAGATAAAGTTTTTGTTAGTTACATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGGCATGTAGAAGATGTCTTCATTGCACACACTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAAAGCCTTCACAATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGGGAATCAAGGGGCAACTATTTATCTGGGAATGCAAATTTTGGTCCCTGTTCTCAAGAACCTCCAATTTGGCCATTGCCAAATTTTGGTGATTCCAATTTTGGAGGGAGTATTATGCCTATTGGCCCGCATCATTCCACAATTGCACACCCACAAGTTGCTTCTCATATGCAGAACTGGGAACCTGGTACTGCTGTCATACAGCAACCATTTGCTCCCCAACAAGCACATTCACATTTGGCTACAATGCCTTTACGGTCTATTCAACCTTCAAACCTGCCTTCTCAGCCATTTTTTCCTGAGGTGCAGAGACCATTAAATCCAGCAGATTCATCAGTTCAGAATATCGAGCAGCAACTAAGTTCACAGCTGCCTACTGAGACTGGAAACAACCCTAATACTGTTGCTGGCAATAACCAGCCTGATATGCCTACTAGTCCACAAGACGAAGATCCCCCCGAGTGTGACTGGAGTGAACACTACTGTCCTGATGGTTATAAATACTACTACAACTGTGTCACTTGTGAAAGCAAATGGGAGAAGCCTGAGGAGTATGCATTACATGAGAAAGAGTCTCAGAAACTGCAGGAGCAGGAGGATAAAAACCGTAGTCACTTGCAATCATCATTACCTTCCTCTCAACAAGTTACTCAAATACAACAGGAAACAAATCATGACCACAGGCAGTCAGAAACAAGTCCTGTTTTTGGATAG 1524 0.4364 RQSKCNRELTKLENQKEHAEQRVNFNGNPTNPYPHDNANAFNHFHPIPPVVDSPYALNHSVPRPPRKRPWQGTSPDQVDGGCHVKVYVAPVPRTATEADIRPVFEGHGTIVEVVLLKDRRTGIRQGSCFVKYATLDEADRAIKALSNQFTFPGESCPVVVRFADRELERLGVRGFCRNLEKKDPLEEVADKVFVSYINKEASKKEIEEIFSPYGHVEDVFIAHTRGYAFVKFSNREMALAAIKGLNKAFTMRGCDHPLIVRFADPKKPKTGESRGNYLSGNANFGPCSQEPPIWPLPNFGDSNFGGSIMPIGPHHSTIAHPQVASHMQNWEPGTAVIQQPFAPQQAHSHLATMPLRSIQPSNLPSQPFFPEVQRPLNPADSSVQNIEQQLSSQLPTETGNNPNTVAGNNQPDMPTSPQDEDPPECDWSEHYCPDGYKYYYNCVTCESKWEKPEEYALHEKESQKLQEQEDKNRSHLQSSLPSSQQVTQIQQETNHDHRQSETSPVFG* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0556 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 165 IPR000504 GO:0003723
Apr4g0556 507 MobiDBLite consensus disorder prediction 21 35 - -
Apr4g0556 507 MobiDBLite consensus disorder prediction 357 424 - -
Apr4g0556 507 CDD WW 425 454 IPR001202 GO:0005515
Apr4g0556 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 250 IPR000504 GO:0003723
Apr4g0556 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 151 IPR000504 GO:0003723
Apr4g0556 507 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 72 404 - -
Apr4g0556 507 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 337 492 - -
Apr4g0556 507 Pfam WW domain 425 452 IPR001202 GO:0005515
Apr4g0556 507 SUPERFAMILY WW domain 426 457 IPR036020 GO:0005515
Apr4g0556 507 MobiDBLite consensus disorder prediction 475 493 - -
Apr4g0556 507 SUPERFAMILY RNA-binding domain, RBD 53 172 IPR035979 GO:0003676
Apr4g0556 507 MobiDBLite consensus disorder prediction 459 507 - -
Apr4g0556 507 MobiDBLite consensus disorder prediction 1 35 - -
Apr4g0556 507 Gene3D - 81 169 IPR012677 -
Apr4g0556 507 MobiDBLite consensus disorder prediction 1 20 - -
Apr4g0556 507 SMART rrm1_1 191 261 IPR000504 GO:0003723
Apr4g0556 507 SMART rrm1_1 85 161 IPR000504 GO:0003723
Apr4g0556 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 265 IPR000504 GO:0003723
Apr4g0556 507 ProSiteProfiles WW/rsp5/WWP domain profile. 421 454 IPR001202 GO:0005515
Apr4g0556 507 MobiDBLite consensus disorder prediction 459 474 - -
Apr4g0556 507 MobiDBLite consensus disorder prediction 377 415 - -
Apr4g0556 507 Gene3D - 179 273 IPR012677 -
Apr4g0556 507 SMART ww_5 422 454 IPR001202 GO:0005515
Apr4g0556 507 PANTHER RNA BINDING PROTEIN 72 404 - -
Apr4g0556 507 PANTHER RNA BINDING PROTEIN 337 492 - -
Apr4g0556 507 SUPERFAMILY RNA-binding domain, RBD 186 274 IPR035979 GO:0003676
Apr4g0556 507 Gene3D - 407 478 - -
Apr4g0556 507 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0556 Apr-Chr4 4608546 4618901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0556 52 315 Eukaryotic Initiation Factors Gene Family AT1G71770 26.007 1.60e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0556 K13207 - gmx:100776162 762.681